Variant report

Variant	rs58400952
Chromosome Location	chr9:92752141-92752142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:
2	chr9:92748243..92750612-chr9:92751364..92753556,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1036699	0.95[ASN][1000 genomes]
rs10993587	0.98[ASN][1000 genomes]
rs12350621	0.95[ASN][1000 genomes]
rs16906012	0.98[ASN][1000 genomes]
rs16906019	0.98[ASN][1000 genomes]
rs16906030	0.98[ASN][1000 genomes]
rs16906038	0.98[ASN][1000 genomes]
rs16906046	0.98[ASN][1000 genomes]
rs2099918	0.98[ASN][1000 genomes]
rs2119293	0.98[ASN][1000 genomes]
rs2890110	0.98[ASN][1000 genomes]
rs57835569	0.95[ASN][1000 genomes]
rs59052558	1.00[EUR][1000 genomes]
rs60994320	0.98[ASN][1000 genomes]
rs61344087	0.98[ASN][1000 genomes]
rs72755008	0.95[ASN][1000 genomes]
rs72755009	0.95[ASN][1000 genomes]
rs72755011	0.95[ASN][1000 genomes]
rs72755015	0.95[ASN][1000 genomes]
rs72755016	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92747600-92753200	Weak transcription	NHEK	skin
4	chr9:92748600-92754400	Weak transcription	Lung	lung
5	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
6	chr9:92749000-92752800	Enhancers	Placenta	Placenta
7	chr9:92749000-92753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:92749200-92753000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:92749600-92752200	Enhancers	Fetal Heart	heart
10	chr9:92750200-92752400	Enhancers	Fetal Muscle Leg	muscle
11	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:92750600-92755400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:92750800-92755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:92751400-92752200	Enhancers	Primary B cells from cord blood	blood
16	chr9:92751400-92752200	Enhancers	Primary B cells from peripheral blood	blood
17	chr9:92751400-92752800	Enhancers	Left Ventricle	heart
18	chr9:92751600-92752200	Weak transcription	Aorta	Aorta
19	chr9:92751600-92754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:92751600-92754400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:92751600-92756000	Weak transcription	HSMMtube	muscle
22	chr9:92751600-92756200	Weak transcription	HSMM	muscle
23	chr9:92751800-92752800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:92751800-92756000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:92752000-92752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:92752000-92752800	Enhancers	Right Atrium	heart

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