Variant report

Variant	rs16906030
Chromosome Location	chr9:92742700-92742701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92742006..92743926-chr9:92747160..92749518,2	K562	blood:
2	chr9:92741195..92742880-chr9:92743389..92745456,2	MCF-7	breast:
3	chr9:92741964..92746302-chr9:92752977..92756296,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1036699	0.96[ASN][1000 genomes]
rs10993587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350621	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs16905942	0.96[EUR][1000 genomes]
rs16905944	0.95[EUR][1000 genomes]
rs16905946	0.96[EUR][1000 genomes]
rs16906012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906038	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890109	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2890110	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528191	1.00[AFR][1000 genomes]
rs57418071	0.87[EUR][1000 genomes]
rs57835569	0.96[ASN][1000 genomes]
rs58400952	0.98[ASN][1000 genomes]
rs58839052	0.96[EUR][1000 genomes]
rs59750037	0.96[EUR][1000 genomes]
rs601128	1.00[AFR][1000 genomes]
rs60144596	0.96[EUR][1000 genomes]
rs60994320	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61344087	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492835	0.96[EUR][1000 genomes]
rs620311	1.00[AFR][1000 genomes]
rs72755008	0.96[ASN][1000 genomes]
rs72755009	0.96[ASN][1000 genomes]
rs72755011	0.96[ASN][1000 genomes]
rs72755015	0.96[ASN][1000 genomes]
rs72755016	0.95[ASN][1000 genomes]
rs749195	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92738400-92743000	Weak transcription	Aorta	Aorta
2	chr9:92740800-92744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links