Variant report

Variant	rs601128
Chromosome Location	chr9:92783219-92783220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIRAS2-4	chr9:92782936-92783827	ENSG00000227555

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16906030	1.00[AFR][1000 genomes]
rs16906046	1.00[AFR][1000 genomes]
rs2099918	1.00[AFR][1000 genomes]
rs2119293	1.00[AFR][1000 genomes]
rs2890109	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs528191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620311	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623789	1.00[ASN][1000 genomes]
rs673122	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
2	chr9:92780600-92784800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:92781000-92783800	Enhancers	Aorta	Aorta
4	chr9:92781200-92783400	Enhancers	HSMMtube	muscle
5	chr9:92781400-92783600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:92781400-92784000	Enhancers	HSMM	muscle
7	chr9:92781400-92784200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:92781400-92784800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:92781600-92783400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr9:92781600-92783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:92781600-92784200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:92781600-92786600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:92782000-92783600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:92782000-92783800	Enhancers	HMEC	breast
16	chr9:92782000-92784200	Enhancers	Left Ventricle	heart
17	chr9:92782200-92783400	Weak transcription	Psoas Muscle	Psoas
18	chr9:92782400-92783400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:92782600-92783600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:92782800-92784800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr9:92783000-92783800	ZNF genes & repeats	NHEK	skin
22	chr9:92783000-92789000	Enhancers	Primary B cells from cord blood	blood

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