Variant report

Variant	rs2119293
Chromosome Location	chr9:92740770-92740771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10118987	0.82[TSI][hapmap]
rs1036699	0.96[ASN][1000 genomes]
rs10991825	0.83[TSI][hapmap]
rs10993587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350621	0.89[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs16905942	0.96[EUR][1000 genomes]
rs16905944	0.95[EUR][1000 genomes]
rs16905946	0.96[EUR][1000 genomes]
rs16906012	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906038	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17541277	1.00[ASW][hapmap]
rs2099918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890109	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2890110	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744475	1.00[ASW][hapmap]
rs528191	1.00[AFR][1000 genomes]
rs57418071	0.87[EUR][1000 genomes]
rs57835569	0.96[ASN][1000 genomes]
rs58400952	0.98[ASN][1000 genomes]
rs58839052	0.96[EUR][1000 genomes]
rs59750037	0.96[EUR][1000 genomes]
rs601128	1.00[AFR][1000 genomes]
rs60144596	0.96[EUR][1000 genomes]
rs60994320	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61344087	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492835	0.96[EUR][1000 genomes]
rs620311	1.00[AFR][1000 genomes]
rs652913	0.87[GIH][hapmap];1.00[MKK][hapmap]
rs72755008	0.96[ASN][1000 genomes]
rs72755009	0.96[ASN][1000 genomes]
rs72755011	0.96[ASN][1000 genomes]
rs72755015	0.96[ASN][1000 genomes]
rs72755016	0.95[ASN][1000 genomes]
rs749195	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2119293	ROR2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92738400-92743000	Weak transcription	Aorta	Aorta
2	chr9:92740200-92740800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr9:92740400-92740800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:92740400-92740800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:92740600-92740800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:92740600-92740800	Enhancers	Adipose Nuclei	Adipose
7	chr9:92740600-92741000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:92740600-92741400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links