Variant report

Variant	rs16905946
Chromosome Location	chr9:92716791-92716792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92712626..92715302-chr9:92716416..92719333,3	MCF-7	breast:
2	chr9:92706967..92708489-chr9:92716567..92719415,2	MCF-7	breast:
3	chr9:92714067..92716934-chr9:92720447..92722876,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10118987	0.87[CEU][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap]
rs10119836	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10121885	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs10123690	1.00[YRI][hapmap]
rs10124931	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10991825	0.87[CEU][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs10993587	0.95[EUR][1000 genomes]
rs12350621	0.81[GIH][hapmap]
rs16905942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905944	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906012	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs16906019	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs16906030	0.96[EUR][1000 genomes]
rs16906038	0.95[EUR][1000 genomes]
rs16906046	0.96[EUR][1000 genomes]
rs17541277	1.00[MKK][hapmap]
rs2099918	0.96[EUR][1000 genomes]
rs2119293	0.96[EUR][1000 genomes]
rs28375233	1.00[YRI][hapmap]
rs2890108	0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2890109	0.81[EUR][1000 genomes]
rs2890110	0.95[EUR][1000 genomes]
rs4744475	1.00[MKK][hapmap]
rs57418071	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58357255	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58839052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021050	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59052558	0.98[ASN][1000 genomes]
rs59127989	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59750037	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60144596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60994320	0.97[EUR][1000 genomes]
rs61344087	0.95[EUR][1000 genomes]
rs61492835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018468	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs7036239	0.81[ASN][1000 genomes]
rs73649353	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs749195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16905946	ROR2	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92705600-92719200	Weak transcription	Ovary	ovary
2	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
3	chr9:92713600-92718400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:92714200-92718400	Enhancers	Fetal Stomach	stomach
5	chr9:92715200-92716800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:92715200-92717200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr9:92715600-92717000	Enhancers	Stomach Mucosa	stomach
8	chr9:92715800-92717200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:92716000-92716800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:92716000-92717600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:92716200-92716800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:92716200-92716800	Enhancers	Brain Cingulate Gyrus	brain
13	chr9:92716200-92716800	Enhancers	Brain Hippocampus Middle	brain
14	chr9:92716200-92716800	Enhancers	Esophagus	oesophagus
15	chr9:92716200-92716800	Enhancers	Placenta	Placenta
16	chr9:92716200-92716800	Enhancers	Left Ventricle	heart
17	chr9:92716200-92716800	Enhancers	Lung	lung
18	chr9:92716200-92716800	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:92716200-92716800	Enhancers	Right Ventricle	heart
20	chr9:92716200-92717000	Enhancers	Brain Anterior Caudate	brain
21	chr9:92716200-92717000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:92716200-92717000	Enhancers	Fetal Brain Male	brain
23	chr9:92716200-92717000	Enhancers	Fetal Intestine Small	intestine
24	chr9:92716200-92717000	Enhancers	Psoas Muscle	Psoas
25	chr9:92716200-92717200	Enhancers	Fetal Lung	lung
26	chr9:92716200-92717200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:92716200-92717200	Enhancers	Stomach Smooth Muscle	stomach
28	chr9:92716200-92717400	Enhancers	Fetal Brain Female	brain
29	chr9:92716200-92717600	Enhancers	Gastric	stomach
30	chr9:92716200-92718000	Enhancers	Adipose Nuclei	Adipose
31	chr9:92716400-92716800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:92716400-92716800	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr9:92716400-92717200	Enhancers	Colon Smooth Muscle	Colon
34	chr9:92716400-92720400	Weak transcription	NHDF-Ad	bronchial
35	chr9:92716600-92716800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr9:92716600-92718000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr9:92716600-92718200	Enhancers	Primary neutrophils fromperipheralblood	blood

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