Variant report

Variant	rs10118987
Chromosome Location	chr9:92691327-92691328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:
2	chr9:92218809..92222310-chr9:92690732..92694174,4	MCF-7	breast:
3	chr9:92689850..92692779-chr9:92694377..92697288,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10119836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821059	0.82[ASW][hapmap]
rs10991825	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906012	0.82[TSI][hapmap]
rs17541277	1.00[MKK][hapmap]
rs28391004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615383	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744475	1.00[MKK][hapmap]
rs58357255	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59021050	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59052558	0.82[ASN][1000 genomes]
rs59127989	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60120851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73649353	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
2	chr9:92686600-92691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:92687000-92691400	Weak transcription	Placenta	Placenta
4	chr9:92689000-92693000	Enhancers	Right Ventricle	heart
5	chr9:92689200-92691600	Enhancers	Lung	lung
6	chr9:92689200-92692400	Enhancers	NHDF-Ad	bronchial
7	chr9:92689200-92693000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:92689200-92693200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:92689200-92693400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:92689200-92694000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:92689600-92691600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:92689600-92691600	Weak transcription	Fetal Intestine Large	intestine
13	chr9:92689600-92692000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:92689600-92692400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:92689800-92691400	Weak transcription	Fetal Intestine Small	intestine
16	chr9:92689800-92697000	Weak transcription	Gastric	stomach
17	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
18	chr9:92690000-92691600	Weak transcription	NH-A	brain
19	chr9:92690000-92692600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:92690400-92691600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr9:92690400-92692800	Enhancers	Left Ventricle	heart
23	chr9:92690400-92693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:92690600-92691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:92690600-92692800	Enhancers	Psoas Muscle	Psoas
26	chr9:92690800-92691600	Weak transcription	Pancreas	Pancrea
27	chr9:92690800-92691800	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:92690800-92695400	Weak transcription	Liver	Liver
29	chr9:92690800-92695600	Weak transcription	Ovary	ovary
30	chr9:92691000-92693000	Enhancers	Brain Germinal Matrix	brain
31	chr9:92691000-92693200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:92691000-92693400	Enhancers	Fetal Thymus	thymus
33	chr9:92691200-92691400	Bivalent Enhancer	Fetal Stomach	stomach
34	chr9:92691200-92693000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:92691200-92693000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr9:92691200-92693000	Enhancers	Spleen	Spleen
37	chr9:92691200-92693000	Enhancers	HSMM	muscle
38	chr9:92691200-92693000	Enhancers	HSMMtube	muscle
39	chr9:92691200-92693200	Enhancers	Fetal Heart	heart
40	chr9:92691200-92693200	Enhancers	Fetal Lung	lung
41	chr9:92691200-92693200	Enhancers	Dnd41	blood
42	chr9:92691200-92693400	Enhancers	Fetal Kidney	kidney
43	chr9:92691200-92693800	Enhancers	Primary T cells from cord blood	blood
44	chr9:92691200-92693800	Enhancers	Primary hematopoietic stem cells	blood

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