Variant report

Variant	rs28451518
Chromosome Location	chr9:92688883-92688884
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92687092..92689404-chr9:92701251..92704588,3	MCF-7	breast:
2	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:
3	chr9:92686545..92689268-chr9:92692416..92694064,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10118987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119836	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121885	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615383	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58357255	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59021050	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59052558	0.82[ASN][1000 genomes]
rs59127989	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60120851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018468	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73649353	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
2	chr9:92681800-92689000	Weak transcription	Right Ventricle	heart
3	chr9:92682000-92689200	Weak transcription	Lung	lung
4	chr9:92683800-92689200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:92685000-92690800	Enhancers	Liver	Liver
6	chr9:92685000-92691200	Weak transcription	Spleen	Spleen
7	chr9:92685200-92689200	Weak transcription	Gastric	stomach
8	chr9:92686200-92689800	Enhancers	Pancreas	Pancrea
9	chr9:92686400-92689600	Weak transcription	Fetal Kidney	kidney
10	chr9:92686600-92689200	Weak transcription	Fetal Lung	lung
11	chr9:92686600-92689200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:92686600-92691000	Weak transcription	Fetal Thymus	thymus
13	chr9:92686600-92691200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:92686600-92691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:92686800-92689000	Weak transcription	Ovary	ovary
16	chr9:92686800-92689200	Weak transcription	Fetal Intestine Small	intestine
17	chr9:92687000-92689200	Weak transcription	Fetal Intestine Large	intestine
18	chr9:92687000-92691400	Weak transcription	Placenta	Placenta
19	chr9:92687400-92689200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:92687400-92689200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:92687800-92689400	Weak transcription	Brain Angular Gyrus	brain
22	chr9:92688000-92690600	Weak transcription	Psoas Muscle	Psoas
23	chr9:92688400-92689000	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:92688400-92689000	Enhancers	HepG2	liver
25	chr9:92688600-92689000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:92688600-92689800	Enhancers	Fetal Brain Female	brain
27	chr9:92688600-92689800	Enhancers	Fetal Stomach	stomach
28	chr9:92688600-92690000	Enhancers	Fetal Brain Male	brain
29	chr9:92688600-92690000	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:92688800-92689200	Enhancers	Fetal Heart	heart

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