Variant report

Variant	rs59127989
Chromosome Location	chr9:92696030-92696031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92691647..92693844-chr9:92695816..92697738,2	MCF-7	breast:
2	chr9:92689850..92692779-chr9:92694377..92697288,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10118987	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10119836	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10121885	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10124931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991825	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12348128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16905909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16905942	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16905944	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16905946	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28391004	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28451518	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28588897	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28615383	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2890108	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58357255	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58839052	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59021050	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59052558	0.86[ASN][1000 genomes]
rs59750037	0.84[ASN][1000 genomes]
rs60120851	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60144596	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61492835	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7018468	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73649353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749195	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92689800-92697000	Weak transcription	Gastric	stomach
2	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
3	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:92692800-92697600	Weak transcription	Psoas Muscle	Psoas
5	chr9:92693000-92697000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:92693200-92696600	Weak transcription	Lung	lung
7	chr9:92693200-92697400	Weak transcription	Brain Anterior Caudate	brain
8	chr9:92693200-92697600	Weak transcription	Brain Substantia Nigra	brain
9	chr9:92693200-92698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial
12	chr9:92695400-92696800	Enhancers	Liver	Liver
13	chr9:92695400-92698600	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:92695600-92696400	Enhancers	Right Atrium	heart
15	chr9:92695800-92696200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:92695800-92696200	Weak transcription	Ovary	ovary
17	chr9:92695800-92703800	Weak transcription	Aorta	Aorta
18	chr9:92696000-92696600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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