Variant report

Variant	rs60388749
Chromosome Location	chr8:65258461-65258462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10088452	1.00[EUR][1000 genomes]
rs11987907	1.00[EUR][1000 genomes]
rs11993427	1.00[EUR][1000 genomes]
rs1440138	1.00[EUR][1000 genomes]
rs16931002	1.00[EUR][1000 genomes]
rs16931022	1.00[EUR][1000 genomes]
rs16931083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1866278	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28636034	1.00[EUR][1000 genomes]
rs28723455	1.00[EUR][1000 genomes]
rs57769957	1.00[EUR][1000 genomes]
rs59279625	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59357695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59921052	1.00[EUR][1000 genomes]
rs60185055	1.00[EUR][1000 genomes]
rs61083487	1.00[EUR][1000 genomes]
rs61287752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61599569	1.00[EUR][1000 genomes]
rs73244044	1.00[EUR][1000 genomes]
rs73244048	1.00[EUR][1000 genomes]
rs73244058	1.00[EUR][1000 genomes]
rs73244060	1.00[EUR][1000 genomes]
rs73244518	1.00[EUR][1000 genomes]
rs73244547	1.00[EUR][1000 genomes]
rs73244563	1.00[EUR][1000 genomes]
rs73244569	1.00[EUR][1000 genomes]
rs73244588	1.00[EUR][1000 genomes]
rs73244595	1.00[EUR][1000 genomes]
rs73244597	1.00[EUR][1000 genomes]
rs73246116	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246121	1.00[EUR][1000 genomes]
rs73246135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246219	1.00[EUR][1000 genomes]
rs73246221	1.00[EUR][1000 genomes]
rs73246230	1.00[EUR][1000 genomes]
rs73246241	1.00[EUR][1000 genomes]
rs73246243	1.00[EUR][1000 genomes]
rs73246246	1.00[EUR][1000 genomes]
rs73246249	1.00[EUR][1000 genomes]
rs73246251	1.00[EUR][1000 genomes]
rs73246253	1.00[EUR][1000 genomes]
rs7814517	1.00[AMR][1000 genomes]
rs7821145	1.00[EUR][1000 genomes]
rs7821209	1.00[EUR][1000 genomes]
rs7842178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv2761224	chr8:65235506-65259631	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1830069	chr8:65235506-65263721	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031877	chr8:65240464-65291136	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1809961	chr8:65242166-65268559	Weak transcription Strong transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1809415	chr8:65242166-65272478	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6230	chr8:65242569-65273236	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65249600-65260000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65257800-65260200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:65258400-65263600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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