Variant report

Variant	rs60185055
Chromosome Location	chr8:65146394-65146395
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:45282955..45284476-chr8:65144448..65146443,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10088452	1.00[EUR][1000 genomes]
rs11987907	1.00[EUR][1000 genomes]
rs11993427	1.00[EUR][1000 genomes]
rs1440138	1.00[EUR][1000 genomes]
rs16931002	1.00[EUR][1000 genomes]
rs16931022	1.00[EUR][1000 genomes]
rs16931083	1.00[EUR][1000 genomes]
rs1866278	1.00[EUR][1000 genomes]
rs28636034	1.00[EUR][1000 genomes]
rs28723455	1.00[EUR][1000 genomes]
rs56686729	1.00[AMR][1000 genomes]
rs57769957	1.00[EUR][1000 genomes]
rs59279625	1.00[EUR][1000 genomes]
rs59357695	1.00[EUR][1000 genomes]
rs59615645	1.00[AMR][1000 genomes]
rs59921052	1.00[EUR][1000 genomes]
rs60388749	1.00[EUR][1000 genomes]
rs61083487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61119787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61287752	1.00[EUR][1000 genomes]
rs61599569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244060	1.00[EUR][1000 genomes]
rs73244518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246116	1.00[EUR][1000 genomes]
rs73246121	1.00[EUR][1000 genomes]
rs73246135	1.00[EUR][1000 genomes]
rs73246219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246241	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821145	1.00[EUR][1000 genomes]
rs7821209	1.00[EUR][1000 genomes]
rs7842178	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3323966	chr8:65143923-65146771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3425880	chr8:65144248-65146571	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65146000-65146400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:65146000-65146400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:65146000-65146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:65146200-65149800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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