Variant report
| Variant | rs60392901 |
|---|---|
| Chromosome Location | chr18:39940910-39940911 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PIK3C3-6 | chr18:39940745-39941040 | NONHSAT059073 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs60923905 | 1.00[AFR][1000 genomes] |
| rs7243805 | 0.84[AFR][1000 genomes] |
| rs73951505 | 1.00[AFR][1000 genomes] |
| rs73951506 | 1.00[AFR][1000 genomes] |
| rs73951508 | 0.92[AFR][1000 genomes] |
| rs73951510 | 0.92[AFR][1000 genomes] |
| rs73951513 | 0.83[AFR][1000 genomes] |
| rs73951514 | 1.00[AFR][1000 genomes] |
| rs73951553 | 1.00[AFR][1000 genomes] |
| rs73951554 | 1.00[AFR][1000 genomes] |
| rs73951579 | 0.92[AFR][1000 genomes] |
| rs73951588 | 0.92[AFR][1000 genomes] |
| rs73951598 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949609 | chr18:39126941-40070286 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1059409 | chr18:39711099-40139446 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2760486 | chr18:39937192-39943193 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
| 4 | nsv909572 | chr18:39938510-40064000 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
