Variant report

Variant	esv2760486
Chromosome Location	chr18:39937192-39943193
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3C3-6	chr18:39940745-39941040	NONHSAT059073
2	lnc-PIK3C3-6	chr18:39937236-39937682	NONHSAT059073

Extended variants
information (count: 129 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:129 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552063762	chr18:39937261-39937262	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs181375809	chr18:39937275-39937276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs528100146	chr18:39937311-39937312	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs546309546	chr18:39937336-39937337	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs377426561	chr18:39937361-39937362	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs346455	chr18:39937481-39937482	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs9304270	chr18:39937509-39937510	Inactive region	lncRNA	n/a	Overlapped CNVs	disease
8	rs556968931	chr18:39937561-39937562	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs569479989	chr18:39937565-39937566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs80281395	chr18:39937604-39937605	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs535781270	chr18:39937622-39937623	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs568374785	chr18:39937624-39937625	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs75687351	chr18:39937630-39937631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs570960	chr18:39937632-39937633	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs77104647	chr18:39937664-39937665	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs368430620	chr18:39937677-39937678	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs111840413	chr18:39940796-39940797	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs185112494	chr18:39940811-39940812	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs543860867	chr18:39940819-39940820	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs560783900	chr18:39940827-39940828	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs115325559	chr18:39940836-39940837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs189621713	chr18:39940844-39940845	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs114660725	chr18:39940891-39940892	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs76668344	chr18:39940904-39940905	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs60392901	chr18:39940910-39940911	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs386802693	chr18:39940956-39940957	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs61067214	chr18:39940958-39940959	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs346452	chr18:39940966-39940967	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	disease
29	rs570024967	chr18:39941072-39941073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs59573036	chr18:39941130-39941131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs537521973	chr18:39941138-39941139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs346451	chr18:39941160-39941161	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs571458687	chr18:39941163-39941164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs142051247	chr18:39941211-39941212	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs151175990	chr18:39941212-39941213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs73951505	chr18:39941216-39941217	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs535842649	chr18:39941228-39941229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs551677769	chr18:39941229-39941230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs192506538	chr18:39941281-39941282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs575763572	chr18:39941311-39941312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs543101619	chr18:39941332-39941333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs565184851	chr18:39941351-39941352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs576976405	chr18:39941364-39941365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs113121052	chr18:39941382-39941383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs570379176	chr18:39941385-39941386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs541718804	chr18:39941390-39941391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs374466109	chr18:39941393-39941394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs56773123	chr18:39941395-39941396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs539071675	chr18:39941408-39941409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs184727868	chr18:39941409-39941410	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
18q deletion syndrome	19533772	CNVD
Acute myeloid leukemia	16864856	CNVD
Colorectal cancer	21102417	CNVD
Colorectal cancer	20709793	CNVD
Pancreatic cancer	21811562	CNVD
Basal cell lymphoma	21115979	CNVD
Mucosa-associated lymphoid tissue lymphomas	21459788	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
colon cancer	17210682	CNVD
Breast cancer	21785460	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	16573809	CNVD
Autism	16446308	CNVD
Colorectal cancer	19359472	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	18056178	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
small cell lung cancer	20016488	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21297112	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Thyroid cancer	19087340	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Colorectal cancer	19150955	CNVD
Acute myeloid leukemia	21251322	CNVD
Colorectal cancer	16912164	CNVD
Lung cancer	18438408	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Seminomas	18059402	CNVD
Breast cancer	16272173	CNVD
Pancreatic cancer	21811587	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Breast cancer	17133270	CNVD
prenatal diagnosis	22389664	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39941000-39941200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:39941200-39946200	Enhancers	Fetal Brain Male	brain
3	chr18:39941400-39945400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:39942800-39943400	Enhancers	Fetal Brain Female	brain

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