Variant report

Variant	rs346455
Chromosome Location	chr18:39937481-39937482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3C3-6	chr18:39937236-39937682	NONHSAT059073

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11082276	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1841621	0.85[EUR][1000 genomes]
rs1993752	0.85[EUR][1000 genomes]
rs2053517	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2335780	0.83[EUR][1000 genomes]
rs2336239	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346195	0.81[EUR][1000 genomes]
rs346211	0.85[EUR][1000 genomes]
rs346262	0.91[EUR][1000 genomes]
rs346440	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs346445	0.86[EUR][1000 genomes]
rs346446	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346448	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346449	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346450	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346451	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346452	0.86[EUR][1000 genomes]
rs365539	0.87[EUR][1000 genomes]
rs369305	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379604	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs394078	0.81[EUR][1000 genomes]
rs413718	0.86[EUR][1000 genomes]
rs414142	0.86[EUR][1000 genomes]
rs415805	0.86[EUR][1000 genomes]
rs421436	0.86[EUR][1000 genomes]
rs428198	0.86[EUR][1000 genomes]
rs436343	0.86[EUR][1000 genomes]
rs454565	0.86[EUR][1000 genomes]
rs4621064	0.82[EUR][1000 genomes]
rs68001532	0.82[EUR][1000 genomes]
rs7237280	0.81[EUR][1000 genomes]
rs8093861	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs922266	0.85[EUR][1000 genomes]
rs976071	0.86[EUR][1000 genomes]
rs9964453	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757676	chr18:39929760-39940403	Inactive region	lncRNA	n/a	inside rSNPs	n/a
4	esv2758725	chr18:39929760-39940403	Inactive region	lncRNA	n/a	inside rSNPs	n/a
5	esv2421962	chr18:39931539-39937789	Inactive region	lncRNA	n/a	inside rSNPs	n/a
6	esv2760486	chr18:39937192-39943193	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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