Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11082276	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053517	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2336239	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs346195	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs346211	0.85[ASN][1000 genomes]
rs346216	0.83[ASN][1000 genomes]
rs346219	0.81[ASN][1000 genomes]
rs346221	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs346229	0.81[ASN][1000 genomes]
rs346230	0.83[ASN][1000 genomes]
rs346262	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs346440	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs346446	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346448	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346449	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs346450	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs346451	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs346452	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346455	0.86[EUR][1000 genomes]
rs365539	0.89[EUR][1000 genomes]
rs369305	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs379604	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs394078	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8093861	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760486	chr18:39937192-39943193	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
4	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv828218	chr18:39943102-39947378	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39941200-39946200	Enhancers	Fetal Brain Male	brain
2	chr18:39941400-39945400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:39942800-39943400	Enhancers	Fetal Brain Female	brain

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