Variant report

Variant	rs365539
Chromosome Location	chr18:39922530-39922531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11082276	0.88[EUR][1000 genomes]
rs1841620	0.87[EUR][1000 genomes]
rs1841621	0.80[EUR][1000 genomes]
rs1993752	0.80[EUR][1000 genomes]
rs2053517	0.88[EUR][1000 genomes]
rs2336239	0.88[EUR][1000 genomes]
rs346262	0.84[EUR][1000 genomes]
rs346440	0.90[EUR][1000 genomes]
rs346445	0.89[EUR][1000 genomes]
rs346446	0.81[EUR][1000 genomes]
rs346448	0.95[EUR][1000 genomes]
rs346449	0.95[EUR][1000 genomes]
rs346450	0.81[EUR][1000 genomes]
rs346451	0.95[EUR][1000 genomes]
rs346452	0.89[EUR][1000 genomes]
rs346455	0.87[EUR][1000 genomes]
rs369305	0.81[EUR][1000 genomes]
rs379604	0.81[EUR][1000 genomes]
rs391148	0.88[EUR][1000 genomes]
rs413718	0.81[EUR][1000 genomes]
rs414142	0.81[EUR][1000 genomes]
rs415805	0.81[EUR][1000 genomes]
rs415810	0.88[EUR][1000 genomes]
rs421436	0.81[EUR][1000 genomes]
rs428198	0.81[EUR][1000 genomes]
rs436343	0.81[EUR][1000 genomes]
rs449040	0.88[EUR][1000 genomes]
rs454565	0.81[EUR][1000 genomes]
rs8093861	0.88[EUR][1000 genomes]
rs922266	0.80[EUR][1000 genomes]
rs976071	0.81[EUR][1000 genomes]
rs9964453	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39917000-39923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:39920200-39923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:39920800-39922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:39921800-39922600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:39922000-39922600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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