Variant report

Variant	rs60401620
Chromosome Location	chr10:6544217-6544218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6542478..6544249-chr10:6551947..6554628,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11258323	1.00[AMR][1000 genomes]
rs56240948	1.00[AMR][1000 genomes]
rs7089785	1.00[AMR][1000 genomes]
rs735238	1.00[AMR][1000 genomes]
rs74112628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74113512	1.00[AMR][1000 genomes]
rs7922677	1.00[AMR][1000 genomes]
rs943455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5687	chr10:6537209-6556751	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:6517200-6557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:6518200-6556800	Weak transcription	Fetal Intestine Large	intestine
6	chr10:6519200-6544400	Weak transcription	Spleen	Spleen
7	chr10:6526600-6553000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:6529000-6546200	Weak transcription	Esophagus	oesophagus
9	chr10:6529000-6552800	Weak transcription	Lung	lung
10	chr10:6530400-6552600	Weak transcription	K562	blood
11	chr10:6533800-6552800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:6534400-6545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:6535400-6553400	Weak transcription	Gastric	stomach
14	chr10:6536600-6552800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:6537400-6552800	Weak transcription	Fetal Stomach	stomach
16	chr10:6537600-6552600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:6537800-6548600	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:6537800-6548800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:6538000-6546800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:6538200-6552800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:6540200-6548800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:6540800-6552200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:6540800-6552800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:6540800-6556600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:6541200-6546600	Strong transcription	Thymus	Thymus
26	chr10:6541400-6545400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:6541400-6551000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr10:6541400-6552800	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:6541600-6545200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:6541600-6555200	Strong transcription	Primary T cells from cord blood	blood
31	chr10:6541800-6545000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:6541800-6548800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:6542000-6545800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr10:6542000-6553000	Strong transcription	Fetal Thymus	thymus
35	chr10:6542200-6544800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:6542400-6545000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:6542400-6545600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:6542600-6545000	Strong transcription	Dnd41	blood
39	chr10:6542800-6545200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:6543000-6545000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:6543000-6546400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:6543000-6546400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:6543000-6555000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:6543200-6554600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:6543600-6544400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:6543600-6546000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:6543800-6544600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:6543800-6545200	Flanking Active TSS	NHEK	skin
49	chr10:6544000-6544400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:6544000-6544400	Enhancers	Primary neutrophils fromperipheralblood	blood

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