Variant report

Variant	rs943455
Chromosome Location	chr10:6613428-6613429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11815091	1.00[AMR][1000 genomes]
rs11819258	1.00[AMR][1000 genomes]
rs56240948	1.00[AMR][1000 genomes]
rs60401620	1.00[AMR][1000 genomes]
rs7089785	1.00[AMR][1000 genomes]
rs735238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112628	1.00[AMR][1000 genomes]
rs74112632	1.00[AMR][1000 genomes]
rs74112636	1.00[AMR][1000 genomes]
rs74112663	1.00[AMR][1000 genomes]
rs74112665	1.00[AMR][1000 genomes]
rs74113512	1.00[AMR][1000 genomes]
rs7922677	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6605400-6621200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:6605600-6616600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:6605600-6618400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:6606000-6614600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:6606200-6620800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:6606600-6616600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:6606800-6620000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:6607200-6617200	Weak transcription	Dnd41	blood
9	chr10:6608200-6616000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:6608800-6616200	Weak transcription	Pancreas	Pancrea
11	chr10:6610200-6615200	Weak transcription	Esophagus	oesophagus
12	chr10:6610200-6620200	Weak transcription	Psoas Muscle	Psoas
13	chr10:6610600-6616200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:6610600-6616400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6610800-6613800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:6610800-6617200	Genic enhancers	Primary T cells fromperipheralblood	blood
17	chr10:6611000-6613600	Genic enhancers	Fetal Thymus	thymus
18	chr10:6611200-6616600	Weak transcription	K562	blood
19	chr10:6611200-6616800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:6611600-6613600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:6611600-6615200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:6611600-6616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:6611800-6616200	Weak transcription	Spleen	Spleen
24	chr10:6612000-6613800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:6612400-6616800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:6612400-6620200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:6613000-6614000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:6613000-6614600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:6613000-6614600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:6613200-6613800	Weak transcription	Thymus	Thymus
31	chr10:6613200-6614000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:6613200-6616400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr10:6613200-6616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:6613400-6615000	Weak transcription	Primary T cells from cord blood	blood
35	chr10:6613400-6615400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:6613400-6617400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:6613400-6618200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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