Variant report

Variant	rs60405618
Chromosome Location	chr5:68263287-68263288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56994272	1.00[AMR][1000 genomes]
rs57150368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59002725	1.00[AMR][1000 genomes]
rs73114924	1.00[AMR][1000 genomes]
rs73114932	1.00[AMR][1000 genomes]
rs73124976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73124977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73124982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73125001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3421637	chr5:68258596-68263994	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3345357	chr5:68259296-68263394	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3435534	chr5:68259296-68263394	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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