Variant report

Variant	rs73124982
Chromosome Location	chr5:68264487-68264488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68258016..68260416-chr5:68261824..68264961,3	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-4	chr5:68264431-68264771	XLOC_004860
2	lnc-CCDC125-4	chr5:68264370-68264771	XLOC_004860
3	lnc-CCDC125-4	chr5:68264370-68264771	XLOC_004860
4	lnc-CCDC125-4	chr5:68264370-68264771	NONHSAT101876
5	lnc-CCDC125-4	chr5:68264370-68264771	NONHSAT101877

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56994272	1.00[AMR][1000 genomes]
rs57150368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59002725	1.00[AMR][1000 genomes]
rs60405618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114924	1.00[AMR][1000 genomes]
rs73114932	1.00[AMR][1000 genomes]
rs73124976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73124977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73125001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68263800-68264800	Enhancers	HepG2	liver
2	chr5:68263800-68271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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