Variant report

Variant	rs60407706
Chromosome Location	chr15:75294915-75294916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34029958	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59553005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60867058	0.81[AFR][1000 genomes]
rs61205963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61668361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7342649	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7342650	1.00[AMR][1000 genomes]
rs74023903	1.00[ASN][1000 genomes]
rs8030362	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:75289400-75305000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:75289400-75305000	Weak transcription	Brain Substantia Nigra	brain
5	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
7	chr15:75289600-75304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:75289600-75305400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:75289800-75296600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:75289800-75298800	Weak transcription	Right Atrium	heart
11	chr15:75289800-75299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:75289800-75299600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:75289800-75304000	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:75290000-75303600	Weak transcription	Brain Angular Gyrus	brain
15	chr15:75290000-75303800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:75290000-75304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:75290000-75304400	Weak transcription	HepG2	liver
18	chr15:75290000-75309400	Weak transcription	Gastric	stomach
19	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
20	chr15:75290200-75299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:75290200-75302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:75290400-75296000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:75290400-75304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:75290400-75304800	Weak transcription	Brain Anterior Caudate	brain
25	chr15:75290600-75304400	Weak transcription	Fetal Stomach	stomach
26	chr15:75291200-75297800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:75291400-75299600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:75291400-75305400	Weak transcription	Fetal Brain Male	brain
29	chr15:75291600-75296400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:75291800-75299000	Weak transcription	GM12878-XiMat	blood
31	chr15:75292000-75305000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:75292600-75305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:75293000-75304000	Weak transcription	Fetal Intestine Large	intestine
34	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:75293800-75295400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:75294000-75297600	Weak transcription	Pancreas	Pancrea
37	chr15:75294200-75295000	Strong transcription	Fetal Intestine Small	intestine
38	chr15:75294600-75295000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:75294600-75295000	Genic enhancers	Fetal Brain Female	brain
40	chr15:75294600-75312200	Weak transcription	Adipose Nuclei	Adipose
41	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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