Variant report

Variant	rs8030362
Chromosome Location	chr15:75290339-75290340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75289096..75291038-chr15:75311135..75313518,2	K562	blood:
2	chr15:75286777..75288532-chr15:75290175..75292211,2	K562	blood:
3	chr15:75286200..75292858-chr15:75303462..75309796,11	MCF-7	breast:
4	chr15:75289676..75292332-chr15:75492915..75494669,2	MCF-7	breast:
5	chr15:75275080..75277543-chr15:75287594..75290421,2	K562	blood:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction
ENSG00000199580	Chromatin interaction
ENSG00000198794	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34029958	1.00[ASN][1000 genomes]
rs59423613	1.00[EUR][1000 genomes]
rs59553005	1.00[ASN][1000 genomes]
rs60407706	1.00[ASN][1000 genomes]
rs60794283	1.00[EUR][1000 genomes]
rs61205963	1.00[ASN][1000 genomes]
rs61668361	1.00[ASN][1000 genomes]
rs6495131	1.00[CHB][hapmap]
rs7342649	1.00[ASN][1000 genomes]
rs74023903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75291000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75289200-75290400	Enhancers	Brain Anterior Caudate	brain
4	chr15:75289400-75291000	Weak transcription	Fetal Intestine Small	intestine
5	chr15:75289400-75291400	Enhancers	Fetal Brain Male	brain
6	chr15:75289400-75299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:75289400-75305000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:75289400-75305000	Weak transcription	Brain Substantia Nigra	brain
9	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
11	chr15:75289600-75292200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:75289600-75304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:75289600-75305400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:75289800-75290400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:75289800-75290400	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr15:75289800-75290400	Transcr. at gene 5' and 3'	Brain Inferior Temporal Lobe	brain
17	chr15:75289800-75290600	Enhancers	Pancreas	Pancrea
18	chr15:75289800-75293800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:75289800-75296600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:75289800-75298800	Weak transcription	Right Atrium	heart
21	chr15:75289800-75299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:75289800-75299600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:75289800-75304000	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:75290000-75303600	Weak transcription	Brain Angular Gyrus	brain
25	chr15:75290000-75303800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:75290000-75304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:75290000-75304400	Weak transcription	HepG2	liver
28	chr15:75290000-75309400	Weak transcription	Gastric	stomach
29	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
30	chr15:75290200-75290400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:75290200-75290400	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:75290200-75291800	Genic enhancers	Fetal Brain Female	brain
33	chr15:75290200-75299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:75290200-75302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links