Variant report

Variant	rs59423613
Chromosome Location	chr15:75286281-75286282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16973530	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58954461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60794283	1.00[EUR][1000 genomes]
rs7173752	1.00[AMR][1000 genomes]
rs73432970	1.00[AMR][1000 genomes]
rs73438515	1.00[AMR][1000 genomes]
rs73438534	1.00[AMR][1000 genomes]
rs73438559	1.00[AMR][1000 genomes]
rs74023903	1.00[EUR][1000 genomes]
rs8029718	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8030362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75283200-75287400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:75283400-75287400	Weak transcription	HMEC	breast
3	chr15:75283400-75287400	Weak transcription	NHEK	skin
4	chr15:75283400-75287600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:75284800-75286600	Enhancers	Brain Germinal Matrix	brain
6	chr15:75285200-75286400	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:75285600-75286400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:75286000-75286400	Enhancers	Brain Angular Gyrus	brain
9	chr15:75286000-75286400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:75286000-75286400	Enhancers	Brain Substantia Nigra	brain
11	chr15:75286000-75286400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr15:75286200-75286400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr15:75286200-75286600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:75286200-75286600	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr15:75286200-75286800	Flanking Active TSS	Fetal Brain Female	brain
16	chr15:75286200-75287000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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