Variant report

Variant	rs73438534
Chromosome Location	chr15:75326686-75326687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
2	chr15:75325335..75328110-chr15:75329539..75332066,2	K562	blood:
3	chr15:75320623..75324392-chr15:75326315..75329283,4	K562	blood:
4	chr15:75324819..75327549-chr15:75491862..75495689,3	MCF-7	breast:
5	chr15:75316003..75319633-chr15:75325409..75329451,5	MCF-7	breast:
6	chr15:75325092..75330336-chr15:75334104..75338099,7	K562	blood:
7	chr15:75325092..75329638-chr15:75334104..75337267,7	K562	blood:
8	chr15:75326538..75328460-chr15:75931013..75933331,2	K562	blood:
9	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000177971	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16973530	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58954461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59423613	1.00[AMR][1000 genomes]
rs7173752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438559	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
2	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75317200-75335000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:75318000-75341400	Weak transcription	Brain Germinal Matrix	brain
5	chr15:75322200-75327200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:75322200-75328200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:75322200-75330200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:75322200-75333400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:75322200-75335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:75322200-75335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:75322200-75339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:75322400-75328000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:75322400-75336800	Weak transcription	Primary T cells from cord blood	blood
14	chr15:75322400-75339200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:75322600-75328400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:75322600-75330200	Weak transcription	NH-A	brain
17	chr15:75322600-75338600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:75322800-75327400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:75322800-75329000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:75322800-75334200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:75322800-75335200	Weak transcription	Brain Anterior Caudate	brain
22	chr15:75322800-75335600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:75323000-75328400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:75323000-75328400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:75323000-75328400	Weak transcription	HSMM	muscle
26	chr15:75323000-75328600	Weak transcription	Colonic Mucosa	Colon
27	chr15:75323000-75330200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:75323000-75330600	Weak transcription	Psoas Muscle	Psoas
29	chr15:75323000-75334600	Weak transcription	Liver	Liver
30	chr15:75323000-75335000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:75323000-75335000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:75323000-75335000	Weak transcription	Gastric	stomach
33	chr15:75323000-75335000	Weak transcription	NHLF	lung
34	chr15:75323000-75335200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:75323000-75335400	Weak transcription	Aorta	Aorta
36	chr15:75323000-75335800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:75323000-75336600	Weak transcription	Dnd41	blood
38	chr15:75323200-75328200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:75323200-75328600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:75323200-75331400	Weak transcription	Fetal Lung	lung
41	chr15:75323200-75334400	Weak transcription	NHDF-Ad	bronchial
42	chr15:75323400-75334200	Weak transcription	Left Ventricle	heart
43	chr15:75323400-75334600	Weak transcription	Right Atrium	heart
44	chr15:75323400-75334600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:75323400-75335000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr15:75323400-75335000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:75323400-75335600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:75323600-75334200	Weak transcription	Right Ventricle	heart
49	chr15:75323600-75335000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:75323600-75336000	Weak transcription	Thymus	Thymus

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