Variant report

Variant	rs60418505
Chromosome Location	chr5:97335138-97335139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2352234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326964	1.00[EUR][1000 genomes]
rs58956624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61327763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767617	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72767619	1.00[AMR][1000 genomes]
rs72767623	1.00[AMR][1000 genomes]
rs72767624	1.00[AMR][1000 genomes]
rs72767625	1.00[AMR][1000 genomes]
rs72767635	1.00[AMR][1000 genomes]
rs72767636	1.00[AMR][1000 genomes]
rs72767638	1.00[AMR][1000 genomes]
rs72767640	1.00[AMR][1000 genomes]
rs72767644	1.00[AMR][1000 genomes]
rs72767646	1.00[AMR][1000 genomes]
rs72767648	1.00[AMR][1000 genomes]
rs72767649	1.00[AMR][1000 genomes]
rs72767650	1.00[AMR][1000 genomes]
rs72767651	1.00[AMR][1000 genomes]
rs72767655	1.00[AMR][1000 genomes]
rs72767657	1.00[AMR][1000 genomes]
rs72783504	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72783506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72783561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020125	chr5:96937248-97350644	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1016231	chr5:97206242-97420435	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1021856	chr5:97258323-97414178	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599062	chr5:97258619-97430527	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2830155	chr5:97278902-97425123	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv4927	chr5:97312116-97357085	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97333400-97335200	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:97333600-97335400	Enhancers	Brain Anterior Caudate	brain
3	chr5:97333600-97336400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:97333800-97335600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:97333800-97336000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:97334000-97335200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:97334000-97336000	Enhancers	Brain Substantia Nigra	brain
8	chr5:97334400-97335200	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:97334600-97335200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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