Variant report

Variant	rs72767646
Chromosome Location	chr5:97404558-97404559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs2352234	1.00[AMR][1000 genomes]
rs4482923	1.00[AMR][1000 genomes]
rs58956624	1.00[AMR][1000 genomes]
rs60418505	1.00[AMR][1000 genomes]
rs61327763	1.00[AMR][1000 genomes]
rs72767603	1.00[AMR][1000 genomes]
rs72767617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767622	1.00[EUR][1000 genomes]
rs72767623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767634	1.00[EUR][1000 genomes]
rs72767635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767643	1.00[EUR][1000 genomes]
rs72767644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767645	1.00[EUR][1000 genomes]
rs72767648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72767687	1.00[AFR][1000 genomes]
rs72767689	1.00[AFR][1000 genomes]
rs72769609	1.00[AFR][1000 genomes]
rs72769614	1.00[AFR][1000 genomes]
rs72769616	1.00[AFR][1000 genomes]
rs72769617	1.00[AFR][1000 genomes]
rs72769642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783504	1.00[AMR][1000 genomes]
rs72783506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783522	1.00[AMR][1000 genomes]
rs72783524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783527	1.00[AMR][1000 genomes]
rs72783528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783541	1.00[AMR][1000 genomes]
rs72783543	1.00[AMR][1000 genomes]
rs72783544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783545	1.00[AMR][1000 genomes]
rs72783546	1.00[AMR][1000 genomes]
rs72783547	1.00[AMR][1000 genomes]
rs72783549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72783561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016231	chr5:97206242-97420435	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1021856	chr5:97258323-97414178	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv599062	chr5:97258619-97430527	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2830155	chr5:97278902-97425123	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1034472	chr5:97357264-97523965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1019049	chr5:97373215-97442582	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv3468503	chr5:97399596-97404594	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv1807551	chr5:97400688-97413587	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
13	esv1814114	chr5:97400688-97413587	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97404000-97405200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97404200-97404600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links