Variant report

Variant	rs72769642
Chromosome Location	chr5:97541753-97541754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs72767603	1.00[AMR][1000 genomes]
rs72767617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72767651	1.00[AMR][1000 genomes]
rs72767655	1.00[AMR][1000 genomes]
rs72767657	1.00[AMR][1000 genomes]
rs72767687	1.00[AFR][1000 genomes]
rs72767689	1.00[AFR][1000 genomes]
rs72769609	1.00[AFR][1000 genomes]
rs72769614	1.00[AFR][1000 genomes]
rs72769616	1.00[AFR][1000 genomes]
rs72769617	1.00[AFR][1000 genomes]
rs72783561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757123	chr5:97442526-97616089	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1033719	chr5:97446209-97557327	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv818360	chr5:97447595-97557817	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv882405	chr5:97477227-97554193	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1029815	chr5:97485129-97563112	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv882406	chr5:97507280-97638743	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97540200-97542600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:97540200-97542600	Enhancers	NHDF-Ad	bronchial
3	chr5:97540400-97551800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:97540600-97542400	Enhancers	HSMMtube	muscle
5	chr5:97541200-97541800	Enhancers	Brain Angular Gyrus	brain
6	chr5:97541200-97542000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:97541200-97542000	Enhancers	Osteobl	bone
8	chr5:97541200-97542200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:97541200-97542200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:97541200-97542200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:97541200-97542200	Enhancers	Brain Hippocampus Middle	brain
12	chr5:97541200-97542400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:97541200-97542400	Enhancers	Brain Substantia Nigra	brain
14	chr5:97541200-97542600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:97541200-97542600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:97541200-97542600	Enhancers	HSMM	muscle
17	chr5:97541200-97542600	Enhancers	NHEK	skin
18	chr5:97541200-97542800	Enhancers	HMEC	breast
19	chr5:97541400-97541800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:97541400-97542200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:97541400-97542200	Enhancers	Brain Germinal Matrix	brain

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