Variant report

Variant	rs60425128
Chromosome Location	chr15:74614260-74614261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74607624..74610095-chr15:74613523..74615057,2	MCF-7	breast:
2	chr15:74614136..74616902-chr15:74617695..74620669,2	K562	blood:
3	chr15:74418976..74421640-chr15:74612670..74615162,3	K562	blood:
4	chr15:74423851..74425420-chr15:74614158..74616775,2	K562	blood:

Variant related genes	Relation type
ENSG00000248540	Chromatin interaction
ENSG00000167178	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12595816	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279377	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3809541	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56833947	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60613279	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:74611000-74617200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:74612000-74614400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
5	chr15:74612600-74614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:74612800-74617400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74612800-74618600	Weak transcription	Ovary	ovary
8	chr15:74613000-74614800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:74613000-74614800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:74613000-74618800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:74613200-74614800	Weak transcription	Spleen	Spleen
12	chr15:74613200-74615000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:74613200-74615200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:74613200-74617600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:74613200-74617600	Weak transcription	Fetal Thymus	thymus
16	chr15:74613200-74619000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:74613200-74619000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:74613400-74614600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:74613400-74614600	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:74613400-74614800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:74613400-74615400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:74613400-74618800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:74613400-74618800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:74613400-74618800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:74613400-74619200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:74613600-74614800	Weak transcription	Hela-S3	cervix
27	chr15:74614200-74615800	Enhancers	Placenta	Placenta

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