Variant report

Variant	rs60613279
Chromosome Location	chr15:74601297-74601298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74592716..74594518-chr15:74600269..74602108,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12595816	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2277604	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279377	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3809541	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56833947	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60425128	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74593800-74601800	Enhancers	Fetal Brain Male	brain
3	chr15:74594000-74602000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:74596600-74606600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74596600-74609800	Weak transcription	A549	lung
6	chr15:74598200-74601400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:74598200-74602000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:74598400-74601400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr15:74598400-74601800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:74598600-74601800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74599000-74601400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr15:74599000-74601800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr15:74599200-74601600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:74600400-74601600	Bivalent Enhancer	Placenta	Placenta
15	chr15:74600400-74601600	Bivalent Enhancer	Fetal Stomach	stomach
16	chr15:74600800-74601600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:74600800-74603200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:74601000-74601400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr15:74601000-74601400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:74601000-74601400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr15:74601000-74601600	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr15:74601200-74601400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr15:74601200-74601400	Enhancers	Fetal Brain Female	brain
24	chr15:74601200-74602000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:74601200-74607800	Weak transcription	Fetal Lung	lung

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