Variant report
Variant | rs6042613 |
---|---|
Chromosome Location | chr20:14224537-14224538 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs17263597 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap] |
rs1998238 | 0.90[CHB][hapmap] |
rs2038505 | 0.83[CEU][hapmap];0.86[CHB][hapmap] |
rs204605 | 0.81[CHB][hapmap] |
rs204639 | 0.83[CEU][hapmap] |
rs2208453 | 0.82[CEU][hapmap];0.86[CHB][hapmap] |
rs2327841 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap] |
rs2327842 | 0.84[CHB][hapmap];0.82[JPT][hapmap] |
rs2423779 | 0.90[CHB][hapmap] |
rs485293 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap] |
rs6033906 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6033926 | 0.90[CHB][hapmap] |
rs6033927 | 0.87[CEU][hapmap];0.90[CHB][hapmap] |
rs6033931 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap] |
rs6033933 | 0.85[CHB][hapmap] |
rs6033941 | 0.87[CEU][hapmap] |
rs6042615 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6042619 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6042629 | 0.90[CHB][hapmap] |
rs6042630 | 0.93[CHB][hapmap];0.82[JPT][hapmap] |
rs6042642 | 0.86[CHB][hapmap] |
rs6042652 | 0.90[CEU][hapmap];0.83[CHB][hapmap] |
rs6042653 | 0.86[CHB][hapmap] |
rs6074719 | 0.91[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap] |
rs6074720 | 0.81[CHB][hapmap] |
rs6074722 | 0.81[CHB][hapmap] |
rs6079355 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6110206 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs615331 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap] |
rs717327 | 0.90[CEU][hapmap] |
rs7263144 | 0.87[CEU][hapmap] |
rs982553 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
rs982554 | 0.81[CHB][hapmap] |
rs994567 | 0.87[CEU][hapmap];0.86[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv458872 | chr20:14189779-14317390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470540 | chr20:14189779-14317390 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv585439 | chr20:14189779-14317390 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1066105 | chr20:14201909-14272115 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14222000-14235200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr20:14224400-14227400 | Enhancers | Fetal Heart | heart |