Variant report
Variant | rs6074722 |
---|---|
Chromosome Location | chr20:14341680-14341681 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1040826 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs17263597 | 0.85[CHB][hapmap];0.83[JPT][hapmap] |
rs1998238 | 0.81[CHB][hapmap];0.89[JPT][hapmap] |
rs2038505 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
rs204605 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs204606 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
rs204608 | 0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs204617 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs204625 | 0.85[ASN][1000 genomes] |
rs204632 | 0.85[ASN][1000 genomes] |
rs204633 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
rs204638 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs204639 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
rs204643 | 0.83[ASN][1000 genomes] |
rs2208453 | 0.85[CHB][hapmap];0.89[JPT][hapmap] |
rs2208455 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2327841 | 0.81[CHB][hapmap];0.83[JPT][hapmap] |
rs2327842 | 0.84[CHB][hapmap];0.94[JPT][hapmap] |
rs2423779 | 0.89[JPT][hapmap] |
rs370158 | 0.86[ASN][1000 genomes] |
rs382674 | 0.85[ASN][1000 genomes] |
rs4384860 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6033926 | 0.84[JPT][hapmap] |
rs6033927 | 0.81[CHB][hapmap] |
rs6033931 | 0.85[CHB][hapmap];0.83[JPT][hapmap] |
rs6033933 | 0.80[CHB][hapmap];0.89[JPT][hapmap] |
rs6033941 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6042613 | 0.81[CHB][hapmap] |
rs6042629 | 0.84[JPT][hapmap] |
rs6042630 | 0.88[JPT][hapmap] |
rs6042642 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
rs6042652 | 0.84[JPT][hapmap] |
rs6042653 | 0.81[CHB][hapmap];0.89[JPT][hapmap] |
rs6042669 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6074719 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6074720 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6074721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6079355 | 0.84[CEU][hapmap];0.86[CHB][hapmap] |
rs6110206 | 0.81[CHB][hapmap] |
rs6135113 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
rs615331 | 0.85[CHB][hapmap];0.83[JPT][hapmap] |
rs717327 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs982553 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs982554 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs994567 | 0.85[CHB][hapmap];0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv432101 | chr20:14294196-14353346 | Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1061705 | chr20:14330029-14430604 | Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv1062079 | chr20:14334350-14429820 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv1063787 | chr20:14341199-14408090 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14341000-14341800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr20:14341000-14342600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr20:14341200-14341800 | Enhancers | HSMMtube | muscle |
4 | chr20:14341200-14343200 | Enhancers | Duodenum Mucosa | Duodenum |
5 | chr20:14341600-14342000 | Enhancers | Fetal Intestine Small | intestine |
6 | chr20:14341600-14342200 | Enhancers | Liver | Liver |