Variant report

Variant	rs60428629
Chromosome Location	chr5:115853162-115853163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115851753..115853692-chr5:115859815..115863109,3	K562	blood:

rs_ID	r²[population]
rs11743446	0.84[EUR][1000 genomes]
rs11749266	0.94[EUR][1000 genomes]
rs11958164	0.82[AFR][1000 genomes]
rs55710268	0.98[AFR][1000 genomes]
rs60388894	0.80[AFR][1000 genomes]
rs6867701	0.89[EUR][1000 genomes]
rs73781648	0.89[EUR][1000 genomes]
rs7711559	0.94[EUR][1000 genomes]
rs7730835	0.89[EUR][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115839000-115855600	Weak transcription	Left Ventricle	heart
3	chr5:115839000-115856400	Weak transcription	HSMMtube	muscle
4	chr5:115839600-115859800	Weak transcription	Colonic Mucosa	Colon
5	chr5:115839800-115856400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr5:115840600-115853800	Weak transcription	Placenta	Placenta
7	chr5:115841600-115858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:115844800-115853400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:115845800-115853400	Weak transcription	Lung	lung
10	chr5:115845800-115853600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:115845800-115856800	Weak transcription	Pancreas	Pancrea
12	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
13	chr5:115846200-115855600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:115847200-115859800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:115847800-115853400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:115847800-115856800	Weak transcription	Psoas Muscle	Psoas
17	chr5:115848000-115853400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:115848200-115854000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:115849000-115854000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:115849600-115853400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:115849600-115857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:115850000-115854200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:115850200-115855200	Enhancers	Brain Cingulate Gyrus	brain
25	chr5:115850200-115855200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:115850200-115855600	Enhancers	Brain Substantia Nigra	brain
27	chr5:115850400-115855200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr5:115850600-115855800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:115850600-115855800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr5:115850800-115854400	Weak transcription	Fetal Brain Female	brain
31	chr5:115850800-115855200	Weak transcription	Fetal Brain Male	brain
32	chr5:115850800-115856400	Weak transcription	Right Atrium	heart
33	chr5:115850800-115856800	Weak transcription	Ovary	ovary
34	chr5:115851000-115855400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
36	chr5:115851400-115855000	Enhancers	Brain Angular Gyrus	brain
37	chr5:115851600-115857000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:115851800-115853200	Weak transcription	Fetal Muscle Leg	muscle
39	chr5:115851800-115853400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:115851800-115855200	Enhancers	Brain Anterior Caudate	brain
41	chr5:115851800-115856400	Weak transcription	Fetal Stomach	stomach
42	chr5:115852000-115854000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr5:115852000-115854800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:115852000-115856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:115852000-115857000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr5:115852200-115853400	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:115852200-115853400	Weak transcription	Fetal Intestine Large	intestine
48	chr5:115852200-115856400	Weak transcription	Adipose Nuclei	Adipose
49	chr5:115852400-115854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:115852400-115854200	Weak transcription	Fetal Intestine Small	intestine

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