Variant report

Variant	rs60433444
Chromosome Location	chr3:113785067-113785068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:113784982-113785126	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
QTRTD1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12107114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56973407	0.82[AFR][1000 genomes]
rs60129450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61674983	0.80[AFR][1000 genomes]
rs6438182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790038	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776200-113789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:113776200-113795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:113776400-113792400	Weak transcription	Esophagus	oesophagus
4	chr3:113776400-113794800	Weak transcription	Aorta	Aorta
5	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
6	chr3:113776600-113785200	Weak transcription	HSMM	muscle
7	chr3:113776600-113786600	Weak transcription	Placenta	Placenta
8	chr3:113776600-113789400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:113776600-113789400	Weak transcription	HSMMtube	muscle
10	chr3:113776600-113790200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:113776600-113795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:113776800-113786800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:113776800-113786800	Weak transcription	Fetal Stomach	stomach
14	chr3:113776800-113787400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:113776800-113789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:113776800-113789400	Weak transcription	Thymus	Thymus
17	chr3:113776800-113789600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:113776800-113789800	Weak transcription	Brain Substantia Nigra	brain
19	chr3:113776800-113790000	Weak transcription	Psoas Muscle	Psoas
20	chr3:113776800-113790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:113776800-113792600	Weak transcription	Right Ventricle	heart
22	chr3:113776800-113795200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:113776800-113798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:113777000-113785200	Weak transcription	Fetal Brain Female	brain
25	chr3:113777000-113786200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:113777000-113786600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr3:113777000-113786600	Weak transcription	Fetal Heart	heart
28	chr3:113777000-113789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr3:113777000-113789600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:113777000-113789600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:113777000-113789600	Weak transcription	Colonic Mucosa	Colon
32	chr3:113777000-113789600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:113777000-113790000	Weak transcription	Fetal Brain Male	brain
34	chr3:113777000-113790200	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:113777000-113790800	Weak transcription	K562	blood
36	chr3:113777000-113792800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:113777200-113786400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:113777200-113790400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:113777200-113790400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:113777200-113791400	Weak transcription	NHLF	lung
41	chr3:113777400-113789000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:113777400-113790600	Weak transcription	Brain Germinal Matrix	brain
43	chr3:113777600-113785600	Weak transcription	Fetal Lung	lung
44	chr3:113777600-113786800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:113777800-113790000	Weak transcription	Gastric	stomach
46	chr3:113777800-113794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:113778000-113786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:113778000-113786600	Weak transcription	NH-A	brain
49	chr3:113778200-113789600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:113779000-113786400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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