Variant report

Variant	rs56973407
Chromosome Location	chr3:113806427-113806428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113806131..113808407-chr3:113812172..113813881,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12107114	0.80[AFR][1000 genomes]
rs59968325	1.00[AMR][1000 genomes]
rs60433444	0.82[AFR][1000 genomes]
rs61674983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438182	0.85[AFR][1000 genomes]
rs6790038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954697	1.00[AMR][1000 genomes]
rs72954699	1.00[AMR][1000 genomes]
rs72956606	1.00[AMR][1000 genomes]
rs72960742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
2	chr3:113782800-113806600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:113782800-113807600	Strong transcription	Primary T cells from cord blood	blood
4	chr3:113783000-113807000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr3:113783000-113807000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:113783000-113808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:113783000-113808400	Strong transcription	Primary B cells from cord blood	blood
8	chr3:113783200-113807000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:113783200-113807000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:113783400-113807000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:113783400-113807200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:113783600-113806800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:113783600-113806800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr3:113783600-113807000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr3:113783600-113807200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:113783600-113807800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:113783600-113807800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:113783800-113806800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:113783800-113806800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:113783800-113807000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:113784000-113806800	Strong transcription	Fetal Intestine Large	intestine
22	chr3:113784000-113806800	Strong transcription	Dnd41	blood
23	chr3:113784000-113807800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:113784200-113806800	Strong transcription	Liver	Liver
25	chr3:113784200-113807000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:113784400-113807000	Strong transcription	A549	lung
27	chr3:113788400-113807000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:113788800-113807000	Strong transcription	Placenta	Placenta
29	chr3:113789400-113806800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr3:113789400-113806800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:113789400-113806800	Strong transcription	Fetal Muscle Leg	muscle
32	chr3:113789400-113807000	Strong transcription	Fetal Thymus	thymus
33	chr3:113789600-113806800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:113790800-113807400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr3:113791000-113806600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:113794000-113814600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr3:113796000-113809000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:113796200-113808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:113796200-113811000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:113798400-113806600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr3:113799000-113806800	Strong transcription	Adipose Nuclei	Adipose
42	chr3:113799600-113807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:113799600-113808200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:113799600-113813600	Weak transcription	Right Atrium	heart
45	chr3:113799800-113811400	Weak transcription	NHLF	lung
46	chr3:113801800-113807600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr3:113802600-113811600	Weak transcription	HSMMtube	muscle
48	chr3:113803000-113806800	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr3:113803000-113806800	Strong transcription	Fetal Intestine Small	intestine
50	chr3:113803000-113806800	Strong transcription	Fetal Stomach	stomach

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