Variant report

Variant	rs59968325
Chromosome Location	chr3:113790366-113790367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113789982..113792147-chr3:113794750..113797619,3	K562	blood:
2	chr3:113780284..113782223-chr3:113790347..113792139,2	K562	blood:

Variant related genes	Relation type
ENSG00000151576	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56973407	1.00[AMR][1000 genomes]
rs59717444	0.91[AFR][1000 genomes]
rs60841131	0.81[AFR][1000 genomes]
rs61674983	1.00[AMR][1000 genomes]
rs6776294	0.88[AFR][1000 genomes]
rs6790021	0.85[AFR][1000 genomes]
rs6790038	1.00[AMR][1000 genomes]
rs72954697	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956688	0.81[AFR][1000 genomes]
rs72956691	0.83[AFR][1000 genomes]
rs72960742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611761	0.88[AFR][1000 genomes]
rs9682132	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776200-113795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:113776400-113792400	Weak transcription	Esophagus	oesophagus
3	chr3:113776400-113794800	Weak transcription	Aorta	Aorta
4	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
5	chr3:113776600-113795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:113776800-113790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:113776800-113792600	Weak transcription	Right Ventricle	heart
8	chr3:113776800-113795200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:113776800-113798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:113777000-113790800	Weak transcription	K562	blood
11	chr3:113777000-113792800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:113777200-113790400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:113777200-113790400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:113777200-113791400	Weak transcription	NHLF	lung
15	chr3:113777400-113790600	Weak transcription	Brain Germinal Matrix	brain
16	chr3:113777800-113794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:113780400-113790400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:113782800-113806600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:113782800-113807600	Strong transcription	Primary T cells from cord blood	blood
20	chr3:113783000-113806400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:113783000-113807000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr3:113783000-113807000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:113783000-113808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:113783000-113808400	Strong transcription	Primary B cells from cord blood	blood
25	chr3:113783200-113801000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:113783200-113807000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:113783200-113807000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:113783400-113796600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr3:113783400-113805600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:113783400-113807000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:113783400-113807200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:113783600-113805000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:113783600-113806800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr3:113783600-113806800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr3:113783600-113807000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr3:113783600-113807200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:113783600-113807800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:113783600-113807800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:113783800-113806800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:113783800-113806800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:113783800-113807000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:113784000-113790600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:113784000-113795000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:113784000-113797600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:113784000-113801000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr3:113784000-113806200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:113784000-113806800	Strong transcription	Fetal Intestine Large	intestine
48	chr3:113784000-113806800	Strong transcription	Dnd41	blood
49	chr3:113784000-113807800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:113784200-113797600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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