Variant report

Variant	rs59717444
Chromosome Location	chr3:113787051-113787052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113786031..113787807-chr3:113795377..113797207,2	MCF-7	breast:
2	chr3:113786711..113788835-chr3:113801972..113803573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151576	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56715399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103401	1.00[AMR][1000 genomes]
rs57185319	1.00[AMR][1000 genomes]
rs58201670	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59968325	0.91[AFR][1000 genomes]
rs60751207	1.00[AMR][1000 genomes]
rs60841131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790021	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954695	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956606	0.88[AFR][1000 genomes]
rs72956688	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956690	1.00[AMR][1000 genomes]
rs72956691	0.91[AFR][1000 genomes]
rs72960742	0.91[AFR][1000 genomes]
rs7611761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7641739	1.00[AMR][1000 genomes]
rs9682132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776200-113789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:113776200-113795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:113776400-113792400	Weak transcription	Esophagus	oesophagus
4	chr3:113776400-113794800	Weak transcription	Aorta	Aorta
5	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
6	chr3:113776600-113789400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:113776600-113789400	Weak transcription	HSMMtube	muscle
8	chr3:113776600-113790200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:113776600-113795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:113776800-113787400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:113776800-113789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:113776800-113789400	Weak transcription	Thymus	Thymus
13	chr3:113776800-113789600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:113776800-113789800	Weak transcription	Brain Substantia Nigra	brain
15	chr3:113776800-113790000	Weak transcription	Psoas Muscle	Psoas
16	chr3:113776800-113790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:113776800-113792600	Weak transcription	Right Ventricle	heart
18	chr3:113776800-113795200	Weak transcription	Brain Angular Gyrus	brain
19	chr3:113776800-113798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:113777000-113789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:113777000-113789600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:113777000-113789600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:113777000-113789600	Weak transcription	Colonic Mucosa	Colon
24	chr3:113777000-113789600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:113777000-113790000	Weak transcription	Fetal Brain Male	brain
26	chr3:113777000-113790200	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:113777000-113790800	Weak transcription	K562	blood
28	chr3:113777000-113792800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:113777200-113790400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:113777200-113790400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:113777200-113791400	Weak transcription	NHLF	lung
32	chr3:113777400-113789000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:113777400-113790600	Weak transcription	Brain Germinal Matrix	brain
34	chr3:113777800-113790000	Weak transcription	Gastric	stomach
35	chr3:113777800-113794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:113778200-113789600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:113780400-113789400	Weak transcription	Spleen	Spleen
38	chr3:113780400-113790400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:113780800-113789400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:113782800-113787200	Strong transcription	HepG2	liver
41	chr3:113782800-113806600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:113782800-113807600	Strong transcription	Primary T cells from cord blood	blood
43	chr3:113783000-113806400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr3:113783000-113807000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr3:113783000-113807000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:113783000-113808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:113783000-113808400	Strong transcription	Primary B cells from cord blood	blood
48	chr3:113783200-113801000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:113783200-113807000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:113783200-113807000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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