Variant report

Variant	rs7638944
Chromosome Location	chr3:113688599-113688600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56715399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57185319	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58201670	1.00[AMR][1000 genomes]
rs59717444	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60751207	1.00[AMR][1000 genomes]
rs60841131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776294	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790021	1.00[AMR][1000 genomes]
rs72954695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954697	0.93[AFR][1000 genomes]
rs72954699	0.93[AFR][1000 genomes]
rs72956606	0.95[AFR][1000 genomes]
rs72956688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956690	1.00[AMR][1000 genomes]
rs72956691	0.95[AFR][1000 genomes]
rs7611761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682132	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113667600-113695800	Weak transcription	Left Ventricle	heart
2	chr3:113667800-113696800	Weak transcription	Right Ventricle	heart
3	chr3:113667800-113710800	Weak transcription	Esophagus	oesophagus
4	chr3:113668000-113692000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:113668000-113699000	Weak transcription	Stomach Mucosa	stomach
6	chr3:113668200-113696200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:113668400-113724200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:113672400-113698000	Weak transcription	Ovary	ovary
9	chr3:113673000-113700800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:113673200-113688600	Weak transcription	Spleen	Spleen
11	chr3:113673400-113696400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:113673400-113704400	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:113676400-113723400	Weak transcription	Brain Substantia Nigra	brain
16	chr3:113678000-113693200	Weak transcription	Fetal Intestine Small	intestine
17	chr3:113678000-113693200	Weak transcription	Fetal Stomach	stomach
18	chr3:113678000-113724400	Weak transcription	Pancreas	Pancrea
19	chr3:113678000-113731400	Weak transcription	Gastric	stomach
20	chr3:113679600-113695800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:113680000-113691200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:113680200-113693200	Weak transcription	Aorta	Aorta
23	chr3:113681400-113693200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:113682200-113691200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:113682800-113707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:113683000-113723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:113685400-113691400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:113685400-113696800	Weak transcription	Lung	lung
29	chr3:113685600-113690200	Weak transcription	Primary B cells from cord blood	blood
30	chr3:113687600-113689000	Enhancers	Liver	Liver
31	chr3:113687800-113688600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:113687800-113688800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:113687800-113688800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:113688200-113688600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr3:113688200-113696400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:113688200-113697600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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