The 2.0 version of rSNPBase

Variant report

Variant rs56715399
Chromosome Location chr3:113684501-113684502
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:113667600-113695800 Weak transcription Left Ventricle heart
2 chr3:113667800-113685000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr3:113667800-113685200 Weak transcription A549 lung
4 chr3:113667800-113696800 Weak transcription Right Ventricle heart
5 chr3:113667800-113710800 Weak transcription Esophagus oesophagus
6 chr3:113668000-113687800 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr3:113668000-113692000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr3:113668000-113699000 Weak transcription Stomach Mucosa stomach
9 chr3:113668200-113696200 Weak transcription Stomach Smooth Muscle stomach
10 chr3:113668400-113724200 Weak transcription Rectal Smooth Muscle rectum
11 chr3:113672000-113685600 Strong transcription Primary B cells from cord blood blood
12 chr3:113672400-113698000 Weak transcription Ovary ovary
13 chr3:113673000-113700800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr3:113673200-113685200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr3:113673200-113688600 Weak transcription Spleen Spleen
16 chr3:113673400-113687600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr3:113673400-113696400 Weak transcription Brain Angular Gyrus brain
18 chr3:113673400-113704400 Weak transcription Brain Hippocampus Middle brain
19 chr3:113673400-113761000 Weak transcription Brain Cingulate Gyrus brain
20 chr3:113674000-113743800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr3:113674200-113685800 Weak transcription Brain Anterior Caudate brain
22 chr3:113676400-113723400 Weak transcription Brain Substantia Nigra brain
23 chr3:113677000-113685600 Weak transcription Primary hematopoietic stem cells blood
24 chr3:113677600-113685000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr3:113678000-113687400 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr3:113678000-113693200 Weak transcription Fetal Intestine Small intestine
27 chr3:113678000-113693200 Weak transcription Fetal Stomach stomach
28 chr3:113678000-113724400 Weak transcription Pancreas Pancrea
29 chr3:113678000-113731400 Weak transcription Gastric stomach
30 chr3:113678800-113686600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr3:113679200-113688200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr3:113679600-113695800 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr3:113679800-113686400 Weak transcription Colonic Mucosa Colon
34 chr3:113680000-113685600 Weak transcription Duodenum Mucosa Duodenum
35 chr3:113680000-113691200 Weak transcription Brain Inferior Temporal Lobe brain
36 chr3:113680200-113693200 Weak transcription Aorta Aorta
37 chr3:113681400-113693200 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr3:113682000-113688000 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr3:113682200-113684800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr3:113682200-113687000 Weak transcription Fetal Intestine Large intestine
41 chr3:113682200-113691200 Weak transcription Primary B cells from peripheral blood blood
42 chr3:113682800-113707200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr3:113683000-113723600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr3:113683200-113685600 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr3:113683400-113685400 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr3:113683800-113684800 Weak transcription Lung lung
47 chr3:113684200-113686400 Weak transcription Adipose Nuclei Adipose
48 chr3:113684200-113687600 Weak transcription Liver Liver

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Last update: Aug 31, 2015