Variant report

Variant	rs60841131
Chromosome Location	chr3:113723051-113723052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56715399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103401	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57185319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58201670	1.00[AMR][1000 genomes]
rs59717444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59968325	0.81[AFR][1000 genomes]
rs60751207	1.00[AMR][1000 genomes]
rs6776294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790021	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954697	0.90[AFR][1000 genomes]
rs72954699	0.90[AFR][1000 genomes]
rs72956606	0.98[AFR][1000 genomes]
rs72956688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956690	1.00[AMR][1000 genomes]
rs72956691	0.98[AFR][1000 genomes]
rs72960742	0.81[AFR][1000 genomes]
rs7611761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7641739	1.00[AMR][1000 genomes]
rs9682132	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113668400-113724200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:113676400-113723400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:113678000-113724400	Weak transcription	Pancreas	Pancrea
6	chr3:113678000-113731400	Weak transcription	Gastric	stomach
7	chr3:113683000-113723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:113692600-113723400	Weak transcription	Fetal Kidney	kidney
9	chr3:113693200-113723800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:113693200-113724200	Weak transcription	A549	lung
11	chr3:113693400-113724000	Weak transcription	Colonic Mucosa	Colon
12	chr3:113693600-113723200	Weak transcription	Fetal Stomach	stomach
13	chr3:113693600-113724600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:113693600-113731200	Weak transcription	Spleen	Spleen
15	chr3:113693800-113731400	Weak transcription	Fetal Brain Female	brain
16	chr3:113694000-113729800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:113694400-113723400	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:113694800-113726000	Weak transcription	Fetal Brain Male	brain
19	chr3:113695400-113725400	Weak transcription	NHDF-Ad	bronchial
20	chr3:113696200-113723600	Weak transcription	HSMMtube	muscle
21	chr3:113697200-113723400	Weak transcription	Lung	lung
22	chr3:113697200-113724200	Weak transcription	Right Ventricle	heart
23	chr3:113697600-113726400	Weak transcription	Brain Germinal Matrix	brain
24	chr3:113698400-113723200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:113699200-113724000	Weak transcription	Liver	Liver
26	chr3:113699400-113723800	Weak transcription	Brain Angular Gyrus	brain
27	chr3:113699600-113723400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:113699600-113724400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:113699600-113753200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:113701400-113724200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:113704400-113724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:113705000-113723400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:113705400-113723600	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:113705800-113723400	Weak transcription	Fetal Lung	lung
35	chr3:113705800-113723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:113706800-113723400	Weak transcription	Ovary	ovary
37	chr3:113710000-113738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:113711200-113723600	Weak transcription	Aorta	Aorta
39	chr3:113711200-113724400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:113711200-113724600	Weak transcription	Esophagus	oesophagus
41	chr3:113711400-113723800	Weak transcription	Fetal Intestine Small	intestine
42	chr3:113712000-113723400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:113712200-113723400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:113712200-113724200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:113715000-113762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:113715800-113723600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:113716800-113724600	Weak transcription	Placenta	Placenta
48	chr3:113717400-113725200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:113717600-113723400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:113718200-113723200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links