Variant report

Variant	rs7641739
Chromosome Location	chr3:113939041-113939042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58201670	1.00[AMR][1000 genomes]
rs59717444	1.00[AMR][1000 genomes]
rs60751207	1.00[AMR][1000 genomes]
rs60841131	1.00[AMR][1000 genomes]
rs6776294	1.00[AMR][1000 genomes]
rs6790021	1.00[AMR][1000 genomes]
rs72956688	1.00[AMR][1000 genomes]
rs72956690	1.00[AMR][1000 genomes]
rs7611761	1.00[AMR][1000 genomes]
rs9682132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009866	chr3:113905339-113970399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113934000-113939200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:113934000-113941800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:113934000-113942600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:113934000-113943400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:113934200-113939200	Enhancers	Primary B cells from cord blood	blood
6	chr3:113934400-113939200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:113935000-113943400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:113935200-113941000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:113935400-113939600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:113935400-113939800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:113935600-113939800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:113936400-113943200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr3:113936400-113948400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:113936800-113943200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:113937000-113941000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:113937600-113941400	Weak transcription	HUVEC	blood vessel
17	chr3:113938800-113939200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:113938800-113939800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:113938800-113939800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr3:113938800-113940800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:113938800-113941000	Weak transcription	Spleen	Spleen
22	chr3:113938800-113943400	Weak transcription	H1 Cell Line	embryonic stem cell

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