Variant report

Variant	rs7611761
Chromosome Location	chr3:113778634-113778635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113774498..113776275-chr3:113777529..113779423,2	K562	blood:
2	chr3:113774652..113777210-chr3:113777264..113779338,2	MCF-7	breast:
3	chr3:113776187..113778659-chr3:113782783..113785844,4	MCF-7	breast:
4	chr3:113774329..113780022-chr3:113781695..113784890,5	K562	blood:

Variant related genes	Relation type
ENSG00000163617	Chromatin interaction
ENSG00000151576	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56715399	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103401	1.00[AMR][1000 genomes]
rs57185319	1.00[AMR][1000 genomes]
rs58201670	1.00[AMR][1000 genomes]
rs59717444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59968325	0.88[AFR][1000 genomes]
rs60751207	1.00[AMR][1000 genomes]
rs60841131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438182	0.82[YRI][hapmap]
rs6776294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790021	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954695	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954697	0.83[AFR][1000 genomes]
rs72954699	0.83[AFR][1000 genomes]
rs72956606	0.91[AFR][1000 genomes]
rs72956688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956690	1.00[AMR][1000 genomes]
rs72956691	0.95[AFR][1000 genomes]
rs72960742	0.88[AFR][1000 genomes]
rs7638944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7641739	1.00[AMR][1000 genomes]
rs7650416	0.86[ASW][hapmap];0.87[MKK][hapmap]
rs9682132	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776200-113789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:113776200-113795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:113776400-113784200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:113776400-113792400	Weak transcription	Esophagus	oesophagus
5	chr3:113776400-113794800	Weak transcription	Aorta	Aorta
6	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
7	chr3:113776600-113780200	Weak transcription	Ovary	ovary
8	chr3:113776600-113783000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:113776600-113783600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:113776600-113783600	Weak transcription	Fetal Kidney	kidney
11	chr3:113776600-113783800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:113776600-113784000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:113776600-113784000	Weak transcription	Lung	lung
14	chr3:113776600-113784200	Weak transcription	Left Ventricle	heart
15	chr3:113776600-113785200	Weak transcription	HSMM	muscle
16	chr3:113776600-113786600	Weak transcription	Placenta	Placenta
17	chr3:113776600-113789400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:113776600-113789400	Weak transcription	HSMMtube	muscle
19	chr3:113776600-113790200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:113776600-113795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:113776800-113780200	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:113776800-113780200	Weak transcription	Fetal Thymus	thymus
23	chr3:113776800-113780600	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:113776800-113784000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:113776800-113786800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:113776800-113786800	Weak transcription	Fetal Stomach	stomach
27	chr3:113776800-113787400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:113776800-113789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:113776800-113789400	Weak transcription	Thymus	Thymus
30	chr3:113776800-113789600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:113776800-113789800	Weak transcription	Brain Substantia Nigra	brain
32	chr3:113776800-113790000	Weak transcription	Psoas Muscle	Psoas
33	chr3:113776800-113790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:113776800-113792600	Weak transcription	Right Ventricle	heart
35	chr3:113776800-113795200	Weak transcription	Brain Angular Gyrus	brain
36	chr3:113776800-113798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr3:113777000-113778800	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr3:113777000-113778800	Weak transcription	NHDF-Ad	bronchial
39	chr3:113777000-113779000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:113777000-113779000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:113777000-113779000	Enhancers	Primary B cells from cord blood	blood
42	chr3:113777000-113779600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:113777000-113779600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:113777000-113779800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:113777000-113780200	Weak transcription	Fetal Intestine Small	intestine
46	chr3:113777000-113783200	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:113777000-113783800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:113777000-113784000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:113777000-113784000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:113777000-113784200	Weak transcription	Rectal Mucosa Donor 31	rectum

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