Variant report
Variant | rs6043441 |
---|---|
Chromosome Location | chr20:15665237-15665238 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs34974579 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59087163 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6034265 | 0.85[YRI][hapmap] |
rs6043435 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6043457 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6043466 | 0.81[AFR][1000 genomes] |
rs73242457 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv3303 | chr20:15656109-15700969 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |