Variant report

Variant	rs6043459
Chromosome Location	chr20:15679783-15679784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12625717	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034266	0.81[EUR][1000 genomes]
rs6034267	0.81[EUR][1000 genomes]
rs6034270	0.81[EUR][1000 genomes]
rs6043449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6043456	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043462	0.81[EUR][1000 genomes]
rs6043464	0.82[EUR][1000 genomes]
rs6043465	0.82[EUR][1000 genomes]
rs6043468	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6110742	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6110748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6514600	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15673800-15680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:15679600-15679800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:15679600-15680000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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