Variant report

Variant	rs6105452
Chromosome Location	chr20:15663771-15663772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12625717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996377	1.00[ASW][hapmap];0.80[MKK][hapmap]
rs17625034	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap]
rs201221	0.82[TSI][hapmap]
rs201222	0.82[TSI][hapmap]
rs201223	0.82[TSI][hapmap]
rs6034261	0.94[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs6043449	0.94[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes]
rs6043456	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043459	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043468	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105453	1.00[CEU][hapmap]
rs6105455	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs6110742	0.84[CEU][hapmap];0.96[EUR][1000 genomes]
rs6110748	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15661200-15664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15662200-15664000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:15662800-15664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:15662800-15664000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:15662800-15664000	Enhancers	Osteobl	bone
6	chr20:15663000-15663800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:15663000-15664000	Enhancers	HUVEC	blood vessel
8	chr20:15663000-15664000	Enhancers	NHDF-Ad	bronchial
9	chr20:15663200-15664000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:15663200-15664000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr20:15663200-15664000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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