Variant report

Variant	rs6043937
Chromosome Location	chr20:16408107-16408108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16407115..16409066-chr20:16429669..16431303,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1012904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1012905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014888	0.83[ASN][1000 genomes]
rs11087166	0.99[ASN][1000 genomes]
rs1884660	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144942	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2273425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332991	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4814491	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4814495	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080256	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105596	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6111101	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6111113	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16384000-16432600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr20:16387400-16411800	Weak transcription	Colonic Mucosa	Colon
3	chr20:16391600-16410800	Weak transcription	Thymus	Thymus
4	chr20:16391800-16409800	Weak transcription	Brain Angular Gyrus	brain
5	chr20:16391800-16414600	Weak transcription	Colon Smooth Muscle	Colon
6	chr20:16392200-16412800	Weak transcription	Fetal Kidney	kidney
7	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:16392400-16411600	Weak transcription	Brain Substantia Nigra	brain
9	chr20:16393800-16408200	Weak transcription	Small Intestine	intestine
10	chr20:16395200-16411400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr20:16396000-16411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr20:16396200-16412800	Weak transcription	NHDF-Ad	bronchial
13	chr20:16396400-16411000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr20:16397400-16412000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:16398200-16417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr20:16398200-16431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr20:16400000-16440000	Weak transcription	NHEK	skin
18	chr20:16400200-16414000	Weak transcription	Fetal Brain Female	brain
19	chr20:16401000-16414200	Weak transcription	Fetal Brain Male	brain
20	chr20:16401200-16408200	Weak transcription	HSMMtube	muscle
21	chr20:16401200-16417000	Weak transcription	Brain Germinal Matrix	brain
22	chr20:16402400-16408200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr20:16402600-16410200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr20:16402600-16412200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr20:16402800-16412800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr20:16402800-16412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr20:16402800-16413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr20:16403000-16413000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr20:16403200-16408200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr20:16403200-16408600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr20:16403200-16409200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr20:16403200-16409200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr20:16403600-16410600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr20:16404000-16410200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:16404000-16410200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr20:16404000-16410800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr20:16404000-16411000	Strong transcription	Adipose Nuclei	Adipose
38	chr20:16404200-16408600	Strong transcription	Fetal Intestine Small	intestine
39	chr20:16404200-16409600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr20:16404200-16410200	Strong transcription	Fetal Intestine Large	intestine
41	chr20:16404200-16410200	Strong transcription	Left Ventricle	heart
42	chr20:16404200-16410200	Strong transcription	Ovary	ovary
43	chr20:16404200-16411200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr20:16404200-16411400	Strong transcription	Primary T cells from cord blood	blood
45	chr20:16404200-16419200	Weak transcription	Fetal Heart	heart
46	chr20:16404400-16408200	Strong transcription	Rectal Smooth Muscle	rectum
47	chr20:16404400-16410000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr20:16404400-16410200	Strong transcription	Esophagus	oesophagus
49	chr20:16404400-16410200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr20:16404400-16410400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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