Variant report

Variant	rs60461337
Chromosome Location	chr7:121245855-121245856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121244907..121245973-chr7:121634716..121635540,3	MCF-7	breast:
2	chr7:121244664..121245983-chr7:121634527..121635831,5	MCF-7	breast:
3	chr7:121243299..121246166-chr7:121634250..121636757,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2402581	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28433587	0.91[AFR][1000 genomes]
rs57135280	0.87[AFR][1000 genomes]
rs59515746	0.90[AFR][1000 genomes]
rs59688740	0.87[AFR][1000 genomes]
rs60903610	0.87[AFR][1000 genomes]
rs61636283	0.87[AFR][1000 genomes]
rs73429156	0.86[AFR][1000 genomes]
rs73429161	0.86[AFR][1000 genomes]
rs73429163	0.87[AFR][1000 genomes]
rs73429166	0.87[AFR][1000 genomes]
rs73429169	0.88[AFR][1000 genomes]
rs73429170	0.88[AFR][1000 genomes]
rs73429173	0.91[AFR][1000 genomes]
rs73429175	0.85[AFR][1000 genomes]
rs73429176	0.88[AFR][1000 genomes]
rs73429178	0.88[AFR][1000 genomes]
rs73429179	0.89[AFR][1000 genomes]
rs73429184	0.92[AFR][1000 genomes]
rs73429185	0.95[AFR][1000 genomes]
rs73429186	0.82[AFR][1000 genomes]
rs73429187	0.95[AFR][1000 genomes]
rs73429189	0.88[AFR][1000 genomes]
rs73429190	0.95[AFR][1000 genomes]
rs73429191	0.95[AFR][1000 genomes]
rs73429197	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429198	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121241600-121246000	Enhancers	Fetal Brain Male	brain
2	chr7:121242600-121246200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:121243000-121246600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121243600-121246200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121243600-121246200	Enhancers	Fetal Brain Female	brain
6	chr7:121243600-121247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:121244000-121246200	Enhancers	Fetal Intestine Small	intestine
8	chr7:121244000-121247400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:121244200-121246000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:121244200-121246000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:121244200-121246000	Enhancers	Colon Smooth Muscle	Colon
12	chr7:121244200-121246000	Enhancers	NHEK	skin
13	chr7:121244600-121246000	Enhancers	Fetal Stomach	stomach
14	chr7:121244600-121246000	Enhancers	Rectal Smooth Muscle	rectum
15	chr7:121244600-121246200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121244600-121246400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:121244600-121246800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:121244800-121246000	Enhancers	Esophagus	oesophagus
19	chr7:121244800-121246000	Enhancers	Pancreas	Pancrea
20	chr7:121244800-121246200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:121245000-121246000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:121245200-121246000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:121245200-121246000	Enhancers	Osteobl	bone
24	chr7:121245400-121246000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:121245400-121246000	Enhancers	Brain Hippocampus Middle	brain
26	chr7:121245400-121248800	Weak transcription	HSMM	muscle
27	chr7:121245600-121246000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:121245600-121246200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:121245600-121249000	Weak transcription	Stomach Mucosa	stomach
30	chr7:121245800-121246000	Enhancers	Fetal Muscle Leg	muscle
31	chr7:121245800-121250600	Weak transcription	Fetal Lung	lung

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