Variant report

Variant	rs73429186
Chromosome Location	chr7:121244883-121244884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121244664..121245983-chr7:121634527..121635831,5	MCF-7	breast:
2	chr7:121243299..121246166-chr7:121634250..121636757,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10270571	1.00[EUR][1000 genomes]
rs12539623	1.00[EUR][1000 genomes]
rs17143522	1.00[EUR][1000 genomes]
rs17143563	1.00[EUR][1000 genomes]
rs17143570	1.00[EUR][1000 genomes]
rs17143700	1.00[EUR][1000 genomes]
rs2141358	1.00[EUR][1000 genomes]
rs2244577	1.00[EUR][1000 genomes]
rs2463647	1.00[EUR][1000 genomes]
rs28433587	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41450350	1.00[EUR][1000 genomes]
rs41529646	1.00[EUR][1000 genomes]
rs57135280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59515746	1.00[EUR][1000 genomes]
rs59688740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60461337	0.82[AFR][1000 genomes]
rs60903610	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636283	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466786	1.00[EUR][1000 genomes]
rs6466787	1.00[EUR][1000 genomes]
rs73429156	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429161	0.91[AMR][1000 genomes]
rs73429163	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429166	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429169	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429170	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429173	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429176	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429179	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429184	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429185	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429187	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429189	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429190	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429191	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121241600-121246000	Enhancers	Fetal Brain Male	brain
2	chr7:121242600-121246200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:121243000-121246600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121243600-121246200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121243600-121246200	Enhancers	Fetal Brain Female	brain
6	chr7:121243600-121247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:121244000-121245800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:121244000-121245800	Enhancers	Ovary	ovary
9	chr7:121244000-121246200	Enhancers	Fetal Intestine Small	intestine
10	chr7:121244000-121247400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:121244200-121245000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:121244200-121245000	Enhancers	Liver	Liver
13	chr7:121244200-121245000	Enhancers	HepG2	liver
14	chr7:121244200-121245600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:121244200-121245800	Enhancers	Fetal Intestine Large	intestine
16	chr7:121244200-121245800	Enhancers	Fetal Lung	lung
17	chr7:121244200-121246000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:121244200-121246000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:121244200-121246000	Enhancers	Colon Smooth Muscle	Colon
20	chr7:121244200-121246000	Enhancers	NHEK	skin
21	chr7:121244400-121245200	Enhancers	NH-A	brain
22	chr7:121244400-121245400	Enhancers	HSMM	muscle
23	chr7:121244400-121245600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:121244600-121245200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:121244600-121245600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:121244600-121245800	Enhancers	HMEC	breast
27	chr7:121244600-121246000	Enhancers	Fetal Stomach	stomach
28	chr7:121244600-121246000	Enhancers	Rectal Smooth Muscle	rectum
29	chr7:121244600-121246200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:121244600-121246400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:121244600-121246800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:121244800-121245000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:121244800-121245200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr7:121244800-121245200	Enhancers	Brain Anterior Caudate	brain
35	chr7:121244800-121245200	Flanking Active TSS	Osteobl	bone
36	chr7:121244800-121245400	Enhancers	Fetal Muscle Leg	muscle
37	chr7:121244800-121245600	Enhancers	Stomach Mucosa	stomach
38	chr7:121244800-121245800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr7:121244800-121246000	Enhancers	Esophagus	oesophagus
40	chr7:121244800-121246000	Enhancers	Pancreas	Pancrea
41	chr7:121244800-121246200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links