Variant report

Variant	rs17143563
Chromosome Location	chr7:121248881-121248882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10270571	1.00[EUR][1000 genomes]
rs12539623	1.00[EUR][1000 genomes]
rs17143522	1.00[EUR][1000 genomes]
rs17143570	1.00[EUR][1000 genomes]
rs17143700	1.00[EUR][1000 genomes]
rs2141358	1.00[EUR][1000 genomes]
rs2244577	1.00[EUR][1000 genomes]
rs2463647	1.00[EUR][1000 genomes]
rs28433587	1.00[EUR][1000 genomes]
rs41450350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41529646	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57135280	1.00[EUR][1000 genomes]
rs59515746	1.00[EUR][1000 genomes]
rs59688740	1.00[EUR][1000 genomes]
rs60903610	1.00[EUR][1000 genomes]
rs61636283	1.00[EUR][1000 genomes]
rs6466786	1.00[EUR][1000 genomes]
rs6466787	1.00[EUR][1000 genomes]
rs73429156	1.00[EUR][1000 genomes]
rs73429163	1.00[EUR][1000 genomes]
rs73429166	1.00[EUR][1000 genomes]
rs73429169	1.00[EUR][1000 genomes]
rs73429170	1.00[EUR][1000 genomes]
rs73429173	1.00[EUR][1000 genomes]
rs73429175	1.00[EUR][1000 genomes]
rs73429176	1.00[EUR][1000 genomes]
rs73429178	1.00[EUR][1000 genomes]
rs73429179	1.00[EUR][1000 genomes]
rs73429184	1.00[EUR][1000 genomes]
rs73429185	1.00[EUR][1000 genomes]
rs73429186	1.00[EUR][1000 genomes]
rs73429187	1.00[EUR][1000 genomes]
rs73429189	1.00[EUR][1000 genomes]
rs73429190	1.00[EUR][1000 genomes]
rs73429191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121245600-121249000	Weak transcription	Stomach Mucosa	stomach
2	chr7:121245800-121250600	Weak transcription	Fetal Lung	lung
3	chr7:121246000-121249000	Weak transcription	NHEK	skin
4	chr7:121246000-121250000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:121246000-121250200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:121246000-121250400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:121246000-121250400	Weak transcription	Fetal Stomach	stomach
8	chr7:121246200-121250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:121247400-121250400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:121247800-121250200	Enhancers	Fetal Brain Male	brain
11	chr7:121248000-121250200	Enhancers	Fetal Brain Female	brain
12	chr7:121248200-121249200	Enhancers	Fetal Heart	heart
13	chr7:121248400-121249000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:121248800-121249200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:121248800-121249200	Enhancers	Pancreas	Pancrea
16	chr7:121248800-121249200	Enhancers	HSMM	muscle
17	chr7:121248800-121249400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:121248800-121250800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:121248800-121250800	Enhancers	Fetal Muscle Leg	muscle
20	chr7:121248800-121250800	Enhancers	HSMMtube	muscle

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