Variant report

Variant	rs17143522
Chromosome Location	chr7:121216889-121216890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10270571	1.00[EUR][1000 genomes]
rs12539623	1.00[EUR][1000 genomes]
rs17143523	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17143563	1.00[EUR][1000 genomes]
rs17143570	1.00[EUR][1000 genomes]
rs17143700	1.00[EUR][1000 genomes]
rs2141358	1.00[EUR][1000 genomes]
rs2244577	1.00[EUR][1000 genomes]
rs2463647	1.00[EUR][1000 genomes]
rs28433587	1.00[EUR][1000 genomes]
rs41450350	1.00[EUR][1000 genomes]
rs41529646	1.00[EUR][1000 genomes]
rs57135280	1.00[EUR][1000 genomes]
rs59515746	1.00[EUR][1000 genomes]
rs59688740	1.00[EUR][1000 genomes]
rs60903610	1.00[EUR][1000 genomes]
rs61636283	1.00[EUR][1000 genomes]
rs6466786	1.00[EUR][1000 genomes]
rs6466787	1.00[EUR][1000 genomes]
rs73429156	1.00[EUR][1000 genomes]
rs73429163	1.00[EUR][1000 genomes]
rs73429166	1.00[EUR][1000 genomes]
rs73429169	1.00[EUR][1000 genomes]
rs73429170	1.00[EUR][1000 genomes]
rs73429173	1.00[EUR][1000 genomes]
rs73429175	1.00[EUR][1000 genomes]
rs73429176	1.00[EUR][1000 genomes]
rs73429178	1.00[EUR][1000 genomes]
rs73429179	1.00[EUR][1000 genomes]
rs73429184	1.00[EUR][1000 genomes]
rs73429185	1.00[EUR][1000 genomes]
rs73429186	1.00[EUR][1000 genomes]
rs73429187	1.00[EUR][1000 genomes]
rs73429189	1.00[EUR][1000 genomes]
rs73429190	1.00[EUR][1000 genomes]
rs73429191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015438	chr7:121161554-121221761	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121215400-121217000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:121216000-121217000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121216600-121221800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:121216800-121221600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:121216800-121221800	Weak transcription	Pancreas	Pancrea

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