Variant report
| Variant | rs41529646 |
|---|---|
| Chromosome Location | chr7:121254089-121254090 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:121252552..121255537-chr7:121259179..121261897,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10270571 | 1.00[EUR][1000 genomes] |
| rs12539623 | 1.00[EUR][1000 genomes] |
| rs17143522 | 1.00[EUR][1000 genomes] |
| rs17143563 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17143570 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17143700 | 1.00[EUR][1000 genomes] |
| rs2141358 | 1.00[EUR][1000 genomes] |
| rs2463647 | 1.00[EUR][1000 genomes] |
| rs28433587 | 1.00[EUR][1000 genomes] |
| rs41450350 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57135280 | 1.00[EUR][1000 genomes] |
| rs59515746 | 1.00[EUR][1000 genomes] |
| rs59688740 | 1.00[EUR][1000 genomes] |
| rs60903610 | 1.00[EUR][1000 genomes] |
| rs61636283 | 1.00[EUR][1000 genomes] |
| rs6466786 | 1.00[EUR][1000 genomes] |
| rs6466787 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs73429156 | 1.00[EUR][1000 genomes] |
| rs73429163 | 1.00[EUR][1000 genomes] |
| rs73429166 | 1.00[EUR][1000 genomes] |
| rs73429169 | 1.00[EUR][1000 genomes] |
| rs73429170 | 1.00[EUR][1000 genomes] |
| rs73429173 | 1.00[EUR][1000 genomes] |
| rs73429175 | 1.00[EUR][1000 genomes] |
| rs73429176 | 1.00[EUR][1000 genomes] |
| rs73429178 | 1.00[EUR][1000 genomes] |
| rs73429179 | 1.00[EUR][1000 genomes] |
| rs73429184 | 1.00[EUR][1000 genomes] |
| rs73429185 | 1.00[EUR][1000 genomes] |
| rs73429186 | 1.00[EUR][1000 genomes] |
| rs73429187 | 1.00[EUR][1000 genomes] |
| rs73429189 | 1.00[EUR][1000 genomes] |
| rs73429190 | 1.00[EUR][1000 genomes] |
| rs73429191 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032054 | chr7:120926379-121432971 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv539103 | chr7:120926379-121432971 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv608333 | chr7:121132213-121379616 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv971219 | chr7:121253389-121260183 | ZNF genes & repeats Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:121249200-121264600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr7:121250800-121257000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr7:121252600-121258000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
