Variant report

Variant	rs60488513
Chromosome Location	chr3:160902478-160902479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34049656	0.82[AFR][1000 genomes]
rs34112645	0.82[AFR][1000 genomes]
rs35064686	0.82[AFR][1000 genomes]
rs58153083	0.81[AFR][1000 genomes]
rs59176805	0.91[AFR][1000 genomes]
rs59714421	0.91[AFR][1000 genomes]
rs60462524	0.81[AFR][1000 genomes]
rs60616512	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160902200-160903400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:160902400-160902800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:160902400-160902800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:160902400-160903000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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